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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01848 ATGAACAGCAATCAAGCAGGAGCCTCATCCAAAGCGAGAGTTGGATCATCCCAGCCTTCAGAAACATCATTCAAACGCAAGCGAGGGGTTTTCCAGAAAGATTTACAGCATATGATGTATGGTTTTGGAGATGATCCTAATCCGCTGCCGGAGACCGTTGCTCTTGTGGAGGATATTGTTGTTGAGTACGTGACAGATATGGTGCATAAAGCCCAAGACGTTGCATCAAAGAGGGGAAAGCTTTTGACTGAGGATTTCTTGTTCTTGATCCGCAAGGACTTGCCCAAGTTAAACCGTTGTACAGAACTACTGTCAATGAATGAAGAACTGAAACAAGCAAGGAAAGCATTCGATGTCGATGAAGAGAAATTGGCATCGGCAGAGTGA 387 44.7 MNSNQAGASSKARVGSSQPSETSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDMVHKAQDVASKRGKLLTEDFLFLIRKDLPKLNRCTELLSMNEELKQARKAFDVDEEKLASAE 128
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01848 128 CDD TAF13 28 118 IPR003195 GO:0006366(InterPro)
Dapi4g01848 128 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID-SUPT3-RELATED 6 125 IPR003195 GO:0006366(PANTHER)|GO:0006366(InterPro)
Dapi4g01848 128 Coils Coil 103 123 - -
Dapi4g01848 128 Gene3D Histone, subunit A 30 74 IPR009072 GO:0046982(InterPro)
Dapi4g01848 128 FunFam Transcription initiation factor TFIID subunit 13 30 74 - -
Dapi4g01848 128 MobiDBLite consensus disorder prediction 1 28 - -
Dapi4g01848 128 MobiDBLite consensus disorder prediction 1 25 - -
Dapi4g01848 128 SUPERFAMILY Histone-fold 31 73 IPR009072 GO:0046982(InterPro)
Dapi4g01848 128 Pfam Transcription initiation factor IID, 18kD subunit 30 118 IPR003195 GO:0006366(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01848 K03127 transcription initiation factor TFIID subunit 13
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Event-related genes

Select Gene_1 Gene_2 Event_name
260271 Dapi20g01786 Dapi4g01848
264874 Dapi4g01848 Dapi20g01786
385576 Dapi20g01786 Dapi4g01848
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2026285 Dapi Dapi20g01786 Dapi-Chr20:106840185 Dapi4g01848 Dapi-Chr4:115714901