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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03588 ATGAAGGCCGACAGTTGCGGCGGTTCACAAACTACGTCGGCATTATCATCAGGTTTTTGTGGTGAAATCACAATGGAGATGCAGATTCAAGCTGAACAGTTTTTGAGTCCAGCAGTTAAAGCAACACTTTGTCTTGGATCTGAAACGCACACGATTGAAGCTTGCAAGGGGATTCTTTCGGACCAATTGGTTTTCGTGAAAGGAGAAAGTATGAGCATATTGAAAGAATTCATCACCAAGCATAATGTTCCAAATGATGTCCCAGATGAAGTTTCATCCGAAGATGACGAAGATGGTGAGGGGCCCACAGTCAAGTCGAAGAAGATTAGAACATAA 336 42.86 MKADSCGGSQTTSALSSGFCGEITMEMQIQAEQFLSPAVKATLCLGSETHTIEACKGILSDQLVFVKGESMSILKEFITKHNVPNDVPDEVSSEDDEDGEGPTVKSKKIRT 111
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03588 111 MobiDBLite consensus disorder prediction 83 111 - -
Smso1g03588 111 PANTHER T2E6.7-RELATED 24 110 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03588 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337975 Smso28g00505 Smso1g03588
346427 Smso20g01815 Smso1g03588
357512 Smso1g03588 Smso28g00503
429029 Smso1g03588 Smso20g01815
429030 Smso1g03588 Smso28g00505
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4967734 Smso Smso1g03588 Smso-Chr1:120997671 Smso28g00505 Smso-Chr28:14004707
5025342 Smso Smso1g03588 Smso-Chr1:120997671 Smso20g01815 Smso-Chr20:61436714
5027949 Smso Smso1g03588 Smso-Chr1:120997671 Smso28g00503 Smso-Chr28:13979982
5028293 Smso Smso1g03588 Smso-Chr1:120997671 Smso29g01584 Smso-Chr29:42877016