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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01281 ATGTATGCCCAGCCATTGCCTGAAACTGTTGCTCTTGTGGAGGATATTGTTGTTGAGTACGTGACAGATATGGTGCATAAAGCCCAGGACGTTGCATCAAAAAGGGGAAAGCTTTTAACGGAAGATTTCTTGTTCTTGATCCGCAAGGACTTGCCAAAGTTAAATCGTTGTACAGAACTGCTGTCAATGAACGAAGAACTGAAACAAGCAAGGAAAGCATTCGATGTTGATGAGGAGAAATTGGCATCAGCCGAGTAA 258 43.02 MYAQPLPETVALVEDIVVEYVTDMVHKAQDVASKRGKLLTEDFLFLIRKDLPKLNRCTELLSMNEELKQARKAFDVDEEKLASAE 85
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01281 85 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID-SUPT3-RELATED 4 83 IPR003195 GO:0006366(PANTHER)|GO:0006366(InterPro)
Bial10g01281 85 Gene3D Histone, subunit A 2 31 IPR009072 GO:0046982(InterPro)
Bial10g01281 85 Pfam Transcription initiation factor IID, 18kD subunit 4 75 IPR003195 GO:0006366(InterPro)
Bial10g01281 85 Coils Coil 60 80 - -
Bial10g01281 85 CDD TAF13 1 75 IPR003195 GO:0006366(InterPro)
Bial10g01281 85 SUPERFAMILY Histone-fold 3 30 IPR009072 GO:0046982(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01281 K03127 transcription initiation factor TFIID subunit 13
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Event-related genes

Select Gene_1 Gene_2 Event_name
182225 Bial10g01281 Bial22g00874
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
782164 Bial Bial10g01281 Bial-Chr10:12810402 Bial22g00874 Bial-Chr22:8374655