AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial22g00878 ATGAAGTACGTGTTGGTGACCGGAGGCGTGGTTAGTGGCCTCGGCAAAGGCGTAACCGCCAGTAGCATTGGCGTTGTTCTTAAGGCATGCGGCCTTCGTGTCACTTCAATTAAAATCGATCCATATTTGAACACGGATGCTGGTACCATGTCTCCGTTTGAACATGGAGAGGTTTTTGTTCTTGATGATGGTGGAGAGGTCGATCTGGATCTCGGTAACTATGAACGGTTCTTAGATGTGAGACTTACCAGGGATAACAACATAACAACTGGAAAGATCTATCAGTCGGTTCTTGAGAAGGAACGAAAAGGGGATTACCTTGGAAAGACGGTCCAGGTGGTCCCGCATATAACAGATGCGATTATGGATTGGATCGAGTCTGTTTCTGCTATCCCGGTTGATGGCAAAGAGGGGCCTGCAGATGTTTGCGTGATAGAATTAGGAGGAACAGTTGGTGACATTGAGTCTATGCCGTTTATAGAGGCTTTGCGACAGTTATTTTTCTCAAAAGGACCAGATAATTTCTGCCTGATTCATGTTAGCCTTGTACCTGTGCTTGGTGTTGTTGGGGAGCAGAAAACAAAACCTACACAACACAGTGTTCGAGAACTGCGAGCGTTAGGCCTAACACCTCACTTTTTAGCTTGTCGGTCCGCTCAGCCATTATTGGAAAATACAAAGCAGAAACTCTCACAATTCTGCCATGTGCCTGGTGCTAACATTCTCAATATACATGATGTTCCAAACATTTGGCACGTTCCTCTTTTACTTCGTAACCAAAATGCTCATGAGGCTATCCTAAAACAACTAGCACTAGTTAGTGTAGCCAAACCTCCAAATTTACAAGAGTGGACTACTAGGGCTGAAACTTTTGACAGTCTCACCAATTCTGTCAAGATTGCAATGGTGGGAAAATATGTTGGTCTAACTGACTCTTATTTGTCTGTTATTAAGGCTCTTCTTCATGCCTGCATTGCATGTTCATTAAAACCATCAATTGAATGGATTGCAGCTTCTGATCTTGAAGACGAAAGTGCCAAATCGACACCAGCAGCTCATTCAAAGGCCTGGGAGACACTAAGGAATTCAGCATGTGTTTTGGTTCCTGGTGGATTTGGTGACCGTGGTGTGAACGGGATGATATTAGCTGCTAAATATGCCCGAGAAAATAAAGTGCCATATCTTGGAATTTGTTTAGGCATGCAGATATCTGTTATTGAGATCTCTAGATCGATCTTGGGCTGGAAAGGGGCAAACAGTACTGAATTTGATGAGCACGCACCCAATCCTGTTGTAATATTCATGCCAGAGGGTTCAAGAACACACATGGGGAACACAATGAGACTCGGTTCTAGAAGAACTTTACTGCAGACTGCTGACTGTATCACTGCAAAACTGTATCACAATCCAGAGTATGTGGATGAGCGACATCGTCATCGTTACGAGGTGAATCCTGAGGTTGTTGGAGATTTAGAAAAGACCGGGTTAAGATTTGTGGGGAAGGATGAAAGTGGTCAACGGATGGAGATTTTAGAGCTTCAAAACCATCCATTTTACGTGGGAGCGCAGTTTCATCCTGAATATAAATCGGGTCCTGGAAGGCCTTCGGCACTATTTTTAGGTCTTATATTAGCAGCAACGGGGCAGTTGGAAGCGTATGTGAAGTCGCATCAGAACGGATCTGTTTAG 1689 44.17 MKYVLVTGGVVSGLGKGVTASSIGVVLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVRLTRDNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIMDWIESVSAIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQLFFSKGPDNFCLIHVSLVPVLGVVGEQKTKPTQHSVRELRALGLTPHFLACRSAQPLLENTKQKLSQFCHVPGANILNIHDVPNIWHVPLLLRNQNAHEAILKQLALVSVAKPPNLQEWTTRAETFDSLTNSVKIAMVGKYVGLTDSYLSVIKALLHACIACSLKPSIEWIAASDLEDESAKSTPAAHSKAWETLRNSACVLVPGGFGDRGVNGMILAAKYARENKVPYLGICLGMQISVIEISRSILGWKGANSTEFDEHAPNPVVIFMPEGSRTHMGNTMRLGSRRTLLQTADCITAKLYHNPEYVDERHRHRYEVNPEVVGDLEKTGLRFVGKDESGQRMEILELQNHPFYVGAQFHPEYKSGPGRPSALFLGLILAATGQLEAYVKSHQNGSV 562
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial22g00878 562 CDD GATase1-CTP-Synthase 298 543 IPR033828 GO:0003883(InterPro)|GO:0006241(InterPro)
Bial22g00878 562 CDD CTPS-N 2 268 IPR017456 GO:0003883(InterPro)|GO:0006221(InterPro)
Bial22g00878 562 Gene3D - 295 560 IPR029062 -
Bial22g00878 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 272 IPR027417 -
Bial22g00878 562 Pfam CTP synthase N-terminus 2 272 IPR017456 GO:0003883(InterPro)|GO:0006221(InterPro)
Bial22g00878 562 SUPERFAMILY Class I glutamine amidotransferase-like 297 548 IPR029062 -
Bial22g00878 562 Pfam Glutamine amidotransferase class-I 309 543 IPR017926 -
Bial22g00878 562 Gene3D - 1 292 IPR027417 -
Bial22g00878 562 NCBIfam CTP synthase (glutamine hydrolyzing) 1 544 IPR004468 GO:0003883(InterPro)|GO:0006221(InterPro)
Bial22g00878 562 PANTHER CTP SYNTHASE 1 558 IPR004468 GO:0003883(PANTHER)|GO:0003883(InterPro)|GO:0006221(InterPro)|GO:0006241(PANTHER)|GO:0019856(PANTHER)|GO:0042802(PANTHER)
Bial22g00878 562 FunFam CTP synthase 1 292 - -
Bial22g00878 562 FunFam CTP synthase 295 560 - -
Bial22g00878 562 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 299 552 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial22g00878 K01937 CTP synthase [EC:6.3.4.2]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
182226 Bial10g01285 Bial22g00878
363610 Bial12g02730 Bial22g00878
374164 Bial22g00878 Bial24g02577
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr17:47926929 Bial22g00878 Bial-Chr22:8395683 dispersed
Bial Bial-Chr22:8395683 Bial2g02206 Bial-Chr2:58658918 dispersed
Bial Bial-Chr10:12842540 Bial22g00878 Bial-Chr22:8395683 wgd
Bial Bial-Chr12:57470280 Bial22g00878 Bial-Chr22:8395683 wgd
Bial Bial-Chr22:8395683 Bial24g02577 Bial-Chr24:56602272 wgd