Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Smso28g00500	ATGCTGACCACCGGCCCACCGCAGTCCGCACCATCCACGACTGATGACTCCACCACAGGTAAGATGAACAACAATCCAGCAGGAGCCTCGTCAAAAGCGAGAGTTGGTTCATCGCAGCCATCAGAAACCTCATTCAAACGCAAGCGTGGAGTTTTTCAGAAAGATTTGCAGCATATGATGTATGGTTTTGGAGATGATCCTAATCCTTTGCCAGAGACTGTTGCTCTTGTGGAGGACATTGTCGTCGAGTATGTGACAGATATGGTGCATAAAGCCCAAGACATTGCATCAAAGAGGGGAAAGCTTTTGACTGAGGATTTCTTGTTCTTGATCCGAAAGGACTTGCCAAAGCTAAACCGTTGTACAGAACTGCTGTCAATGAATGAAGAACTGAAACAAGCCAGGAAAGCATTCGATGTCGATGAGGAGAAACTGGCATCAGCAGAGTGA	450	46.89	MLTTGPPQSAPSTTDDSTTGKMNNNPAGASSKARVGSSQPSETSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDMVHKAQDIASKRGKLLTEDFLFLIRKDLPKLNRCTELLSMNEELKQARKAFDVDEEKLASAE	149

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Smso28g00500	149	Gene3D	Histone, subunit A	51	95	IPR009072	GO:0046982(InterPro)
	Smso28g00500	149	MobiDBLite	consensus disorder prediction	1	49	-	-
	Smso28g00500	149	PANTHER	TRANSCRIPTION INITIATION FACTOR TFIID-SUPT3-RELATED	22	146	IPR003195	GO:0006366(PANTHER)\|GO:0006366(InterPro)
	Smso28g00500	149	FunFam	Transcription initiation factor TFIID subunit 13	51	95	-	-
	Smso28g00500	149	SUPERFAMILY	Histone-fold	52	94	IPR009072	GO:0046982(InterPro)
	Smso28g00500	149	CDD	TAF13	49	139	IPR003195	GO:0006366(InterPro)
	Smso28g00500	149	MobiDBLite	consensus disorder prediction	1	46	-	-
	Smso28g00500	149	Coils	Coil	124	144	-	-
	Smso28g00500	149	Pfam	Transcription initiation factor IID, 18kD subunit	51	139	IPR003195	GO:0006366(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Smso28g00500	K03127	transcription initiation factor TFIID subunit 13

Event-related genes

Select	Gene_1	Gene_2	Event_name
	337977	Smso28g00500	Smso1g03590
	357510	Smso1g03590	Smso28g00500
	429032	Smso1g03590	Smso28g00500

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	5017635	Smso	Smso2g01113	Smso-Chr2:18408944	Smso28g00500	Smso-Chr28:13865323
	5027951	Smso	Smso1g03590	Smso-Chr1:121026298	Smso28g00500	Smso-Chr28:13865323