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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03589 ATGGGAGAAGTGAGATTATTTGTGAATTTTAATGATGATGATGATGATGAATATTTGTTGTATCCATCAATATCATCATCAGAAATCATATTTTGCAGAATATGCCATGAAGCAGAGTTTGAAAGCTCCAAAACCATGGAGTCTCCATGTTCTTGTTCTGGTACTGTAAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGTGATGAAAAGGGCAACACCACTTGTGAAATTTGTCTTCAGGAATTTGAACCAGGTTACTCATCCCCTCTCAAACTCGTCCAAAACCAAGGATTAGTACGTGTGGAGGTGCCTGAAATTGAGGGTAATTCGGTCATTGTTGCTCAACAAGAAAGGACTGTTGATCCGGAGTACCCGCAAAGCTCATCTTCCGCGGATACAAGTGCTTCTATTTGCAGATTTCTGTGTATCGCTGTTACACTACTTCTACTGGTGAGACATTTGTTTGTATTGTCGATTGAAGGAACAAGGGATTACCCGTTTACGCTCTTAACTTTGTTGGTTATGAGGGCTAGTGGGATAATAGTCCCTATGTACATAATCATGCACACGGTTGACTCCATCCATAAGACCATCATCGCAAGTCGTTACCAGGTTTCTGAGGATGGCAGCCAGAGGCAGCAGTATAGATTGGTTTAG 660 41.52 MGEVRLFVNFNDDDDDEYLLYPSISSSEIIFCRICHEAEFESSKTMESPCSCSGTVKFAHRDCIQRWCDEKGNTTCEICLQEFEPGYSSPLKLVQNQGLVRVEVPEIEGNSVIVAQQERTVDPEYPQSSSSADTSASICRFLCIAVTLLLLVRHLFVLSIEGTRDYPFTLLTLLVMRASGIIVPMYIIMHTVDSIHKTIIASRYQVSEDGSQRQQYRLV 219
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03589 219 PANTHER RING-FYVE-PHD ZINC FINGER DOMAIN-CONTAINING 22 205 IPR033275 GO:0004842(PANTHER)|GO:0016020(PANTHER)|GO:0016567(PANTHER)
Smso1g03589 219 FunFam E3 ubiquitin-protein ligase MARCH4 22 89 - -
Smso1g03589 219 Pfam RING-variant domain 32 79 IPR011016 GO:0008270(InterPro)
Smso1g03589 219 ProSiteProfiles Zinc finger RING-CH-type profile. 24 86 IPR011016 GO:0008270(InterPro)
Smso1g03589 219 Pfam Protein of unknown function (DUF3675) 85 191 IPR022143 -
Smso1g03589 219 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 21 89 IPR013083 -
Smso1g03589 219 SMART ringv-2 31 80 IPR011016 GO:0008270(InterPro)
Smso1g03589 219 CDD RING-CH-C4HC3-MARCH 32 79 - -
Smso1g03589 219 SUPERFAMILY RING-U-box 26 83 - -
Smso1g03589 219 ProSiteProfiles Zinc finger RING-type profile. 32 79 IPR001841 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03589 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
141517 Smso10g00657 Smso1g03589
337976 Smso28g00504 Smso1g03589
357511 Smso1g03589 Smso28g00502
429031 Smso1g03589 Smso28g00504
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4967735 Smso Smso1g03589 Smso-Chr1:121001241 Smso28g00502 Smso-Chr28:13976655
5023256 Smso Smso1g03589 Smso-Chr1:121001241 Smso10g00657 Smso-Chr10:6823192
5025418 Smso Smso1g03589 Smso-Chr1:121001241 Smso20g00758 Smso-Chr20:13209790
5027950 Smso Smso1g03589 Smso-Chr1:121001241 Smso28g00501 Smso-Chr28:13951930
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Smso29g00316 ACH 67 252 HMGR gene family AT4G34100 66.154 2.85e-79 255.0
Smso29g00317 . 294 408 HMGR gene family AT4G34100 69.231 3.42e-44 151.0
Smso29g00318 . 643 755 HMGR gene family AT4G34100 64.706 9.30e-45 153.0
Smso29g00319 ACH 826 971 HMGR gene family AT4G34100 62.667 7.06e-59 197.0
Smso28g00501 ACH 68 132 HMGR gene family AT4G34100 34.848 4.45e-09 53.9
Smso28g00502 SST 68 125 HMGR gene family AT4G34100 35.593 7.95e-09 53.9
Smso28g00504 SST,WGDA 68 125 HMGR gene family AT4G34100 35.593 7.95e-09 53.9
Smso27g00596 . 68 129 HMGR gene family AT4G34100 40.323 3.22e-09 56.6
Smso27g02371 . 492 552 HMGR gene family AT1G76490 49.18 5.41e-10 57.4
Smso26g02816 . 479 512 HMGR gene family AT4G34100 67.647 9.68e-10 53.5
Smso25g00886 . 52 360 HMGR gene family AT4G34100 78.205 1.34e-158 470.0
Smso25g00887 SST 385 766 HMGR gene family AT4G34100 68.542 0.0 530.0
Smso25g00888 SST 881 1107 HMGR gene family AT4G34100 75.771 1.32e-113 348.0
Smso25g02480 . 68 125 HMGR gene family AT4G34100 41.379 2.47e-10 58.2
Smso25g02789 . 51 632 HMGR gene family AT1G76490 72.589 0.0 871.0
Smso24g00763 ACH,SST,WGDA 67 1067 HMGR gene family AT4G34100 71.741 0.0 1478.0
Smso24g01259 SST 20 632 HMGR gene family AT1G76490 68.78 0.0 841.0
Smso24g02780 . 68 142 HMGR gene family AT4G34100 33.333 1.62e-10 59.3
Smso23g01104 . 38 129 HMGR gene family AT4G34100 31.579 1.94e-09 56.2
Smso23g01357 . 68 118 HMGR gene family AT4G34100 45.098 9.40e-10 57.8
Smso22g01681 . 68 129 HMGR gene family AT4G34100 40.323 2.48e-10 58.9
Smso21g00054 ACH,SST 220 632 HMGR gene family AT1G76490 79.302 0.0 706.0
Smso21g00429 . 68 129 HMGR gene family AT4G34100 35.484 1.08e-07 51.6
Smso21g01309 . 68 142 HMGR gene family AT4G34100 36.0 3.83e-10 58.9
Smso21g02049 ACH,SST 87 633 HMGR gene family AT1G76490 68.727 0.0 781.0
Smso20g00758 . 68 139 HMGR gene family AT4G34100 35.616 7.26e-11 59.3
Smso19g00845 . 68 142 HMGR gene family AT4G34100 34.667 5.20e-10 58.2
Smso18g01284 ACH,SST,WGDA 51 1107 HMGR gene family AT4G34100 74.136 0.0 1581.0
Smso17g02790 . 68 124 HMGR gene family AT4G34100 43.86 2.42e-09 56.6
Smso14g00238 . 68 125 HMGR gene family AT4G34100 41.379 2.47e-10 58.2
Smso14g00554 . 51 632 HMGR gene family AT1G76490 71.574 0.0 863.0
Smso14g01996 . 49 129 HMGR gene family AT4G34100 34.568 3.49e-10 58.2
Smso13g01230 . 68 139 HMGR gene family AT4G34100 35.616 8.33e-10 56.2
Smso12g01233 . 68 132 HMGR gene family AT4G34100 36.923 4.07e-11 58.9
Smso10g00657 ACH 68 141 HMGR gene family AT4G34100 36.0 9.56e-11 58.9
Smso10g03460 ACH,WGDA 67 1107 HMGR gene family AT4G34100 58.318 0.0 1154.0
Smso9g00851 ACH,SST,WGDA 100 1102 HMGR gene family AT4G34100 71.04 0.0 1448.0
Smso8g01736 . 68 124 HMGR gene family AT4G34100 43.86 4.84e-09 55.8
Smso7g00280 ACH 67 1108 HMGR gene family AT4G34100 71.962 0.0 1492.0
Smso6g00178 . 68 141 HMGR gene family AT4G34100 33.784 6.68e-10 57.8
Smso6g01828 SST 51 632 HMGR gene family AT1G76490 72.867 0.0 857.0
Smso5g00797 SST,WGDA 43 1067 HMGR gene family AT4G34100 71.04 0.0 1475.0
Smso4g00061 ACH,SST 51 632 HMGR gene family AT1G76490 73.019 0.0 869.0
Smso4g00397 . 68 129 HMGR gene family AT4G34100 35.484 9.57e-08 51.2
Smso4g01343 . 68 142 HMGR gene family AT4G34100 36.0 2.74e-10 58.9
Smso4g02129 ACH,SST 142 633 HMGR gene family AT1G76490 70.648 0.0 722.0
Smso3g00628 . 68 129 HMGR gene family AT4G34100 40.323 1.93e-09 57.4
Smso2g01192 . 199 631 HMGR gene family AT1G76490 73.21 0.0 655.0
Smso2g02050 . 38 129 HMGR gene family AT4G34100 31.579 1.23e-09 56.6
Smso2g02618 . 68 129 HMGR gene family AT4G34100 41.935 3.33e-10 58.9
Smso1g02018 SST,WGDA 52 1107 HMGR gene family AT4G34100 74.6 0.0 1566.0
Smso1g03589 ACH,SST,WGDA 68 132 HMGR gene family AT4G34100 34.848 1.61e-09 55.5