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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01783 ATGGCAGAAGTGAAATTAGTTGTGGATTTCGATGACAAAGATGATCAGTTTCTGTTGTATCCATCAATTTCATCAGAAGATATTATATTTTGCAGAATTTGTCATGAAGCAGAGTTTGAAAGCTCTAAATCAATGGAGTCTCCATGTTATTGTTCCGGAACTGTAAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGTGATGAAAAGGGCAACACCACTTGTGAAATTTGTCTCCAGGAATTTGAACATGGATACTCATCCCCTCAGAAACTCATCCAAAACCACACAGAAGTCAGATTGGTGGTGACTGAAACTGATGTTAGTTATGGAATTGTTGCTCAACAAGAAAGGATTGATGAAGCAGAATATCCGCAGTGTTCATCGTCCGCTGATATGACTGCTTCCATCTGCAGATTTTTGGGTCTTGCTGTTACCCTACTGCTACTGGTGAGACATTTACTTGTAGTTTTGGTTGAAGGAACAGGGGATTACCCGTTTACGCTCTTAACCTTGTTGATTATGAGGGCAAGTGGGATATTAGTCCCTATGTACATAATAATGTACACGGTCGACACCATACACAAGACCATCAGAAGTCGATATCAGGTTTCCTGA 618 40.13 MAEVKLVVDFDDKDDQFLLYPSISSEDIIFCRICHEAEFESSKSMESPCYCSGTVKFAHRDCIQRWCDEKGNTTCEICLQEFEHGYSSPQKLIQNHTEVRLVVTETDVSYGIVAQQERIDEAEYPQCSSSADMTASICRFLGLAVTLLLLVRHLLVVLVEGTGDYPFTLLTLLIMRASGILVPMYIIMYTVDTIHKTIRSRYQVS 205
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01783 205 PANTHER RING-FYVE-PHD ZINC FINGER DOMAIN-CONTAINING 22 199 IPR033275 GO:0004842(PANTHER)|GO:0016020(PANTHER)|GO:0016567(PANTHER)
Dapi20g01783 205 Pfam RING-variant domain 31 78 IPR011016 GO:0008270(InterPro)
Dapi20g01783 205 CDD RING-CH-C4HC3-MARCH 31 78 - -
Dapi20g01783 205 ProSiteProfiles Zinc finger RING-CH-type profile. 23 85 IPR011016 GO:0008270(InterPro)
Dapi20g01783 205 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 20 89 IPR013083 -
Dapi20g01783 205 SUPERFAMILY RING-U-box 25 82 - -
Dapi20g01783 205 SMART ringv-2 30 79 IPR011016 GO:0008270(InterPro)
Dapi20g01783 205 Pfam Protein of unknown function (DUF3675) 106 190 IPR022143 -
Dapi20g01783 205 FunFam E3 ubiquitin-protein ligase MARCH4 21 88 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01783 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
78282 Dapi20g01783 Dapi7g02607
260270 Dapi20g01783 Dapi4g01847
264873 Dapi4g01847 Dapi20g01783
385575 Dapi20g01783 Dapi4g01847
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1912625 Dapi Dapi20g01783 Dapi-Chr20:106740645 Dapi23g02188 Dapi-Chr23:108977699
2026284 Dapi Dapi20g01783 Dapi-Chr20:106740645 Dapi4g01847 Dapi-Chr4:115600845
2026666 Dapi Dapi20g01783 Dapi-Chr20:106740645 Dapi7g02607 Dapi-Chr7:112052898
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Dapi26g00716 DST,WGDA 67 135 HMGR gene family AT4G34100 36.232 1.26e-09 58.5
Dapi24g01261 ACH,DST 68 129 HMGR gene family AT4G34100 41.935 1.65e-10 59.7
Dapi23g00047 ACH,DST,WGDA 67 1108 HMGR gene family AT4G34100 71.756 0.0 1489.0
Dapi28g00983 ACH,DST 36 1107 HMGR gene family AT4G34100 73.247 0.0 1569.0
Dapi27g01437 ACH 68 131 HMGR gene family AT4G34100 42.188 2.95e-09 56.6
Dapi18g02429 DST 198 632 HMGR gene family AT1G76490 79.176 0.0 719.0
Dapi18g02855 ACH,DST 68 129 HMGR gene family AT4G34100 38.71 8.88e-09 53.9
Dapi1g01162 . 41 118 HMGR gene family AT4G34100 74.699 6.85e-33 118.0
Dapi1g01163 . 113 777 HMGR gene family AT4G34100 62.908 0.0 780.0
Dapi12g01051 ACH,DST 36 1108 HMGR gene family AT4G34100 73.18 0.0 1567.0
Dapi10g00145 . 68 141 HMGR gene family AT4G34100 33.784 9.28e-10 57.4
Dapi30g02253 DST 51 632 HMGR gene family AT1G76490 73.413 0.0 873.0
Dapi30g01900 DST 68 125 HMGR gene family AT4G34100 41.379 2.87e-10 58.2
Dapi7g02607 ACH,DST,WGDA 68 131 HMGR gene family AT4G34100 35.385 4.49e-10 57.0
Dapi25g00595 . 68 129 HMGR gene family AT4G34100 41.935 2.82e-10 59.3
Dapi11g01183 . 68 131 HMGR gene family AT4G34100 42.188 2.57e-09 57.0
Dapi32g00274 DST,WGDA 81 131 HMGR gene family AT4G34100 39.216 2.88e-08 50.8
Dapi6g00825 ACH,DST 67 1070 HMGR gene family AT4G34100 71.841 0.0 1462.0
Dapi14g01938 DST 68 125 HMGR gene family AT4G34100 41.379 3.22e-10 58.2
Dapi14g02265 DST 51 632 HMGR gene family AT1G76490 73.756 0.0 872.0
Dapi5g01001 . 489 630 HMGR gene family AT1G76490 70.423 6.80e-63 201.0
Dapi5g01002 DST 489 584 HMGR gene family AT1G76490 83.333 8.31e-51 167.0
Dapi5g01003 DST 339 447 HMGR gene family AT1G76490 65.138 4.00e-47 158.0
Dapi5g01005 . 489 633 HMGR gene family AT1G76490 72.414 6.96e-65 207.0
Dapi5g01006 DST 71 632 HMGR gene family AT1G76490 67.082 0.0 778.0
Dapi14g00681 DST 68 129 HMGR gene family AT4G34100 40.323 1.99e-10 58.9
Dapi21g01031 DST 90 632 HMGR gene family AT1G76490 69.245 0.0 776.0
Dapi21g01030 DST 338 447 HMGR gene family AT1G76490 66.364 1.16e-48 162.0
Dapi21g01029 DST 489 630 HMGR gene family AT1G76490 71.831 7.69e-64 204.0
Dapi20g01783 ACH,DST,WGDA 68 118 HMGR gene family AT4G34100 36.538 3.89e-09 53.9
Dapi22g01993 DST 83 632 HMGR gene family AT1G76490 73.188 0.0 816.0
Dapi9g00578 . 68 130 HMGR gene family AT4G34100 41.27 5.75e-10 58.2
Dapi26g00130 . 68 136 HMGR gene family AT4G34100 37.681 8.20e-11 60.8
Dapi21g00152 . 68 142 HMGR gene family AT4G34100 36.0 3.15e-10 58.5
Dapi8g01399 ACH,DST 68 129 HMGR gene family AT4G34100 41.935 1.06e-10 60.1
Dapi10g01712 DST 51 632 HMGR gene family AT1G76490 69.449 0.0 832.0
Dapi16g00273 DST,WGDA 68 131 HMGR gene family AT4G34100 36.923 2.77e-09 55.5
Dapi5g00104 . 68 142 HMGR gene family AT4G34100 36.0 3.92e-10 58.9
Dapi7g00040 ACH,DST,WGDA 67 1108 HMGR gene family AT4G34100 70.992 0.0 1482.0
Dapi30g00467 ACH,DST 68 129 HMGR gene family AT4G34100 37.097 3.83e-09 55.1
Dapi30g00704 DST 68 129 HMGR gene family AT4G34100 40.323 1.99e-10 58.9
Dapi4g01847 ACH,DST,WGDA 68 118 HMGR gene family AT4G34100 36.538 3.89e-09 53.9
Dapi22g00596 ACH,DST 67 1070 HMGR gene family AT4G34100 71.841 0.0 1466.0
Dapi6g02007 DST 285 632 HMGR gene family AT1G76490 83.333 0.0 610.0
Dapi2g03302 DST 198 632 HMGR gene family AT1G76490 79.176 0.0 719.0
Dapi2g03675 ACH,DST 68 129 HMGR gene family AT4G34100 38.71 8.24e-09 54.7
Dapi14g00445 ACH,DST 68 129 HMGR gene family AT4G34100 37.097 3.83e-09 55.1
Dapi26g01721 DST 51 632 HMGR gene family AT1G76490 68.647 0.0 829.0
Dapi17g01265 WGDA 41 1107 HMGR gene family AT4G34100 74.214 0.0 1572.0