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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00075 ATGAATAATAGTAATAATAATCCAGCAGGAGCCTCATCAAAAGGTAAAGTTGGTTCATCACAGCCATCAGAAACATCATTCAAACGCAAAAGAGGAGTTTTTCAGAAAGATTTGCAGCATATGATGTATGGTTTTGGAGATGATCCTAATCCGTTGCCAGAGACTGTTGCTCTTGTGGAGGACATTGTTGTTGAATATGTGACAGATATGGTGCATAAAGCCCAAGATATTGCATCAAAGAGGGGAAAGCTCTTGACTGAGGATTTCTTGTTCTTGATCCGCAAAGACTTGCCCAAGTTAAACCGTTGTACAGAACTGCTGTCAATGAACGAAGAACTGAAACAAGCTAGAAAAGCGTTCGACGTGGATGAGGAGAAGCTGGTATCGCCAGAATGA 396 41.16 MNNSNNNPAGASSKGKVGSSQPSETSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDMVHKAQDIASKRGKLLTEDFLFLIRKDLPKLNRCTELLSMNEELKQARKAFDVDEEKLVSPE 131
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00075 131 FunFam Transcription initiation factor TFIID subunit 13 33 77 - -
Hean1g00075 131 Coils Coil 106 126 - -
Hean1g00075 131 MobiDBLite consensus disorder prediction 1 31 - -
Hean1g00075 131 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID-SUPT3-RELATED 3 130 IPR003195 GO:0006366(InterPro)|GO:0006366(PANTHER)
Hean1g00075 131 Gene3D Histone, subunit A 33 77 IPR009072 GO:0046982(InterPro)
Hean1g00075 131 SUPERFAMILY Histone-fold 34 76 IPR009072 GO:0046982(InterPro)
Hean1g00075 131 MobiDBLite consensus disorder prediction 1 28 - -
Hean1g00075 131 Pfam Transcription initiation factor IID, 18kD subunit 33 121 IPR003195 GO:0006366(InterPro)
Hean1g00075 131 CDD TAF13 31 121 IPR003195 GO:0006366(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00075 K03127 transcription initiation factor TFIID subunit 13
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3228972 Hean Hean1g00075 Hean-Chr1:1874397 Hean4g00075 Hean-Chr4:1574834