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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00311 ATGGCAGAAGTGAGATTATTTGTAAATATTAATCATGAAGATGATGATGATCAATATTTGTTGTATCCATCAATTTCTTCAGCAGAAATAATATTTTGTAGAATATGTCATGAAGCAGAGTTTGAAAGCTCTAAATCCATGGACTCTCCATGTTCATGTTCTGGTACTGTAAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGTAATGAAAAGGGAAACACCACTTGTGAAATTTGTCTTCAGGAATTTGAACCTGGATACTCATCCCCTCTAAAACTTATCCAAAACCAAGATGTAGTAAGTTTAGAGGTGCCTGAAACTGAGGTCAGTTCTGCTATTTTTGTTCAACAAGAAAGAACTGCTGAAGCAGAATATCCGCAGTGTTCATCCACCGCGGATACAAGTGCTTCTATCTACAGATGTTTGGGTCTCATTGTTACCTTACTTCTACTAGTCAGACATTTGTTTGTATTGTTTAATGAAGGAACAAGGGACTACCCGTTTACGCTCTTAACTCTGTTGGTTATGAGGGCAAGTGGGATAGTAATCCCTATGTACATAATCATGCGCACGGTTGATGCCCTGCATAAAACCATTACTCGTCGATATCAGGTTTCCGAGGATGGCAGCCAGAGGCACGCGGTATAG 651 39.48 MAEVRLFVNINHEDDDDQYLLYPSISSAEIIFCRICHEAEFESSKSMDSPCSCSGTVKFAHRDCIQRWCNEKGNTTCEICLQEFEPGYSSPLKLIQNQDVVSLEVPETEVSSAIFVQQERTAEAEYPQCSSTADTSASIYRCLGLIVTLLLLVRHLFVLFNEGTRDYPFTLLTLLVMRASGIVIPMYIIMRTVDALHKTITRRYQVSEDGSQRHAV 216
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00311 216 SUPERFAMILY RING-U-box 28 84 - -
Amtr12g00311 216 SMART ringv-2 32 81 IPR011016 GO:0008270(InterPro)
Amtr12g00311 216 Pfam RING-variant domain 33 80 IPR011016 GO:0008270(InterPro)
Amtr12g00311 216 Pfam Protein of unknown function (DUF3675) 86 193 IPR022143 -
Amtr12g00311 216 CDD RING-CH-C4HC3-MARCH 33 80 - -
Amtr12g00311 216 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 22 90 IPR013083 -
Amtr12g00311 216 ProSiteProfiles Zinc finger RING-CH-type profile. 25 87 IPR011016 GO:0008270(InterPro)
Amtr12g00311 216 PANTHER RING-FYVE-PHD ZINC FINGER DOMAIN-CONTAINING 23 206 IPR033275 GO:0004842(PANTHER)|GO:0016020(PANTHER)|GO:0016567(PANTHER)
Amtr12g00311 216 FunFam E3 ubiquitin-protein ligase MARCH4 23 90 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00311 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
221645 Amtr Amtr06g02700 Amtr-Chr6:50310428 Amtr12g00311 Amtr-Chr12:9282072
238990 Amtr Amtr10g00146 Amtr-Chr10:2922597 Amtr12g00311 Amtr-Chr12:9282072
242202 Amtr Amtr10g04231 Amtr-Chr10:98505495 Amtr12g00311 Amtr-Chr12:9282072
271194 Amtr Amtr12g00311 Amtr-Chr12:9282072 Amtr07g05725 Amtr-Chr7:119532697
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Amtr01g00217 WGDA 51 632 HMGR gene family AT1G76490 70.132 0.0 848.0
Amtr01g02604 WGDA 68 141 HMGR gene family AT4G34100 33.784 6.65e-10 57.8
Amtr01g04453 ACH 947 1067 HMGR gene family AT4G34100 81.818 6.93e-66 214.0
Amtr01g06292 ACH,WGDA 68 129 HMGR gene family AT4G34100 38.71 4.40e-10 58.5
Amtr01g08626 ACH 68 119 HMGR gene family AT4G34100 40.385 2.36e-10 57.4
Amtr02g08291 . 67 1107 HMGR gene family AT4G34100 74.738 0.0 1569.0
Amtr03g04580 ACH,WGDA 68 129 HMGR gene family AT4G34100 40.323 7.48e-11 60.1
Amtr05g00171 . 68 125 HMGR gene family AT4G34100 41.379 2.98e-10 58.2
Amtr05g00381 . 51 632 HMGR gene family AT1G76490 72.696 0.0 862.0
Amtr05g04758 ACH 68 124 HMGR gene family AT4G34100 42.105 1.39e-09 57.0
Amtr06g02700 . 68 131 HMGR gene family AT4G34100 33.846 9.33e-10 55.8
Amtr07g03026 . 67 1108 HMGR gene family AT4G34100 74.071 0.0 1562.0
Amtr07g05725 ACH 68 129 HMGR gene family AT4G34100 40.323 4.08e-10 57.4
Amtr08g03117 WGDA 51 632 HMGR gene family AT1G76490 67.732 0.0 846.0
Amtr08g04273 ACH 39 129 HMGR gene family AT4G34100 29.67 2.84e-09 55.8
Amtr08g04334 WGDA 68 136 HMGR gene family AT4G34100 39.13 6.14e-10 57.4
Amtr09g02948 ACH 68 129 HMGR gene family AT4G34100 38.71 3.02e-09 55.5
Amtr09g03767 . 51 632 HMGR gene family AT1G76490 68.136 0.0 806.0
Amtr10g02830 . 86 632 HMGR gene family AT1G76490 71.558 0.0 815.0
Amtr10g04231 . 68 141 HMGR gene family AT4G34100 36.486 3.78e-10 58.9
Amtr11g03155 ACH 44 1067 HMGR gene family AT4G34100 71.317 0.0 1473.0
Amtr12g00311 . 68 148 HMGR gene family AT4G34100 32.927 4.73e-10 57.0