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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00073 ATGGGAGAAGTGAGATTATTTATTGATTTTGATGATGATCAATATTTGTTGTATCCATCAATTTCTTCAGCAGAAATTATATTTTGTAGAATATGTCATGAAGCAGAGTTTGAAAGCTCTAAAACCATGGAGTCTCCCTGTTCTTGTTCTGGTACAGTAAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGTGATGAAAAGGGCAACACCACTTGTGAAATTTGTCTTCAGGAATTTGAACCTGGATACTCATCTTCTCTAAAACTCATCCAAAACCATAGAATAGTAAGTTTGGAGGCGCCTGAAACTGAGGTTACTTCTGCCATTATTGTTCAACAAGAAAGGACTGCTGAAGCAGAATACCCGCAGTGTTCGTCCACCGCTGATACAAGCGCTTATATATGCAGATTTTTTGGTCTTGTTGTTACACTACTTCTACTAGTGAGACATTTGTGTGTCTTGTGGCTTGAAGGAACAGGGGATTACCCGTTTACGCTTTTAACTTTGTTGATTATGAGGGCTAGTGGGATAATAATCCCTATGTACATACTCATCCGCACGGTTGACGCCATCCACAAGACCATCACAAGTCGTTATCAGGTTCCGGATGATGGCAATCAACGGCAAGCAGTATAG 639 40.22 MGEVRLFIDFDDDQYLLYPSISSAEIIFCRICHEAEFESSKTMESPCSCSGTVKFAHRDCIQRWCDEKGNTTCEICLQEFEPGYSSSLKLIQNHRIVSLEAPETEVTSAIIVQQERTAEAEYPQCSSTADTSAYICRFFGLVVTLLLLVRHLCVLWLEGTGDYPFTLLTLLIMRASGIIIPMYILIRTVDAIHKTITSRYQVPDDGNQRQAV 212
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00073 212 CDD RING-CH-C4HC3-MARCH 29 76 - -
Hean1g00073 212 SMART ringv-2 28 77 IPR011016 GO:0008270(InterPro)
Hean1g00073 212 SUPERFAMILY RING-U-box 24 80 - -
Hean1g00073 212 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270(InterPro)
Hean1g00073 212 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 18 86 IPR013083 -
Hean1g00073 212 Pfam RING-variant domain 29 76 IPR011016 GO:0008270(InterPro)
Hean1g00073 212 Pfam Protein of unknown function (DUF3675) 101 189 IPR022143 -
Hean1g00073 212 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Hean1g00073 212 FunFam E3 ubiquitin-protein ligase MARCH4 19 86 - -
Hean1g00073 212 PANTHER RING-FYVE-PHD ZINC FINGER DOMAIN-CONTAINING 22 199 IPR033275 GO:0004842(PANTHER)|GO:0016020(PANTHER)|GO:0016567(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00073 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3228970 Hean Hean1g00073 Hean-Chr1:1847943 Hean9g02810 Hean-Chr9:140598500
3257890 Hean Hean1g00073 Hean-Chr1:1847943 Hean1g00074 Hean-Chr1:1854739
3281027 Hean Hean1g00073 Hean-Chr1:1847943 Hean4g03206 Hean-Chr4:172441625
3281188 Hean Hean1g00073 Hean-Chr1:1847943 Hean6g00487 Hean-Chr6:8764486
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g01568 WGDA 68 141 HMGR gene family AT4G34100 33.784 8.86e-10 57.4
Hean17g02944 . 94 615 HMGR gene family AT1G76490 67.816 0.0 735.0
Hean17g02946 . 51 632 HMGR gene family AT1G76490 67.979 0.0 816.0
Hean17g04516 . 68 142 HMGR gene family AT4G34100 36.0 4.09e-10 58.9
Hean16g01325 . 897 964 HMGR gene family AT4G34100 72.059 1.96e-23 94.7
Hean16g01330 ACH 37 351 HMGR gene family AT4G34100 65.07 2.61e-141 437.0
Hean16g02123 . 51 632 HMGR gene family AT1G76490 73.196 0.0 873.0
Hean16g02488 . 67 1067 HMGR gene family AT4G34100 71.272 0.0 1458.0
Hean16g04664 WGDA 51 632 HMGR gene family AT1G76490 70.413 0.0 848.0
Hean15g01539 ACH 68 129 HMGR gene family AT4G34100 37.097 2.74e-09 55.8
Hean15g02650 ACH,WGDA 51 632 HMGR gene family AT1G76490 67.987 0.0 830.0
Hean14g01785 ACH 57 118 HMGR gene family AT4G34100 37.097 3.43e-11 60.1
Hean12g03458 . 68 142 HMGR gene family AT4G34100 34.667 1.97e-10 59.3
Hean9g01324 WGDA 67 1107 HMGR gene family AT4G34100 74.476 0.0 1541.0
Hean9g01694 . 68 125 HMGR gene family AT4G34100 41.379 1.90e-09 56.6
Hean9g02810 ACH 68 129 HMGR gene family AT4G34100 40.323 4.14e-10 58.2
Hean8g00505 ACH 68 129 HMGR gene family AT4G34100 38.71 8.33e-10 57.0
Hean8g00901 . 51 632 HMGR gene family AT1G76490 71.333 0.0 861.0
Hean8g03313 ACH,WGDA 68 129 HMGR gene family AT4G34100 40.323 8.26e-11 60.1
Hean7g01172 ACH 434 582 HMGR gene family AT1G76490 67.114 1.85e-66 213.0
Hean6g00487 WGDA 68 131 HMGR gene family AT4G34100 36.923 3.72e-11 60.1
Hean6g01144 WGDA 67 123 HMGR gene family AT4G34100 40.351 4.90e-11 62.8
Hean5g00588 . 112 313 HMGR gene family AT4G34100 41.089 6.24e-37 134.0
Hean5g03160 ACH,WGDA 68 129 HMGR gene family AT4G34100 40.323 1.75e-09 57.0
Hean4g03206 WGDA 68 131 HMGR gene family AT4G34100 35.385 1.19e-09 55.8
Hean3g01608 ACH,WGDA 67 1107 HMGR gene family AT4G34100 74.117 0.0 1567.0
Hean2g01389 ACH 68 131 HMGR gene family AT4G34100 40.625 5.25e-09 55.5
Hean1g00073 . 68 127 HMGR gene family AT4G34100 34.426 1.30e-09 55.5
Hean1g00074 . 68 124 HMGR gene family AT4G34100 34.483 1.12e-10 54.3