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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli3g00845 ATGAACAGCAATTCGGCAGGACCCTCGTCGAAAGTCAAAGTTGGATCTTCGCAACCTTCGGAATCATCGTTCAAACGCAAGCGTGGGGTTTTTCAGAAAGATTTGCAGCATATGATGTATGGGTTTGGAGATGATCCTAATCCATTGCCAGAGACTGTTGCACTTGTGGAGGACATTGTTGTTGAGTATGTGACAGATATGGTGCACAAAGCGCAAGACATTGCATCAAAGAGGGGAAAGCTTCTGACTGAGGATTTCTTGTTCTTGATACGAAAGGACTTGCCCAAGTTAAACCGTTGTACAGAACTGCTGTCAATGAACGAAGAACTGAAACAAGCCAGGAAAGCATTTGATGTTGATGAGGAGAAACTGGCATCAGCAGAGTGA 387 44.44 MNSNSAGPSSKVKVGSSQPSESSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDMVHKAQDIASKRGKLLTEDFLFLIRKDLPKLNRCTELLSMNEELKQARKAFDVDEEKLASAE 128
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli3g00845 128 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID-SUPT3-RELATED 6 125 IPR003195 GO:0006366(PANTHER)|GO:0006366(InterPro)
Fli3g00845 128 CDD TAF13 28 118 IPR003195 GO:0006366(InterPro)
Fli3g00845 128 Gene3D Histone, subunit A 30 74 IPR009072 GO:0046982(InterPro)
Fli3g00845 128 Pfam Transcription initiation factor IID, 18kD subunit 30 118 IPR003195 GO:0006366(InterPro)
Fli3g00845 128 Coils Coil 103 123 - -
Fli3g00845 128 MobiDBLite consensus disorder prediction 1 28 - -
Fli3g00845 128 MobiDBLite consensus disorder prediction 1 25 - -
Fli3g00845 128 FunFam Transcription initiation factor TFIID subunit 13 30 74 - -
Fli3g00845 128 SUPERFAMILY Histone-fold 31 73 IPR009072 GO:0046982(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli3g00845 K03127 transcription initiation factor TFIID subunit 13
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2380961 Fli Fli3g00845 Fli-Chr3:23067273 Fli3g00848 Fli-Chr3:23250539