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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
  The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00081 Cobi2g02258 Bial10g01288 Bial22g00882 . . Hetu1g00092 Hetu2g00151 Hetu3g00084 Amtr12g00328 Smso1g03596 Smso28g00495 Taer4g02359 Fro14g01262 Fso1g02069 Ftr2g00780 Fra18g01744 Fli3g00839 Stre1g04316 . Hean11g02595 . Bial12g02731 Bial24g02578 Dapi4g01855 . Hetu32g02196 Hetu31g02183 Hetu33g02140 . . Smso20g01820 Taer4g02359 Fro13g01336 . Ftr6g02291 Fra13g01442 Fli9g01384 Stre1g04310 .
Hean1g00082 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00083 Cobi2g02260 Bial10g01290 Bial22g00884 . . Hetu1g00093 Hetu2g00152 Hetu3g00086 Amtr12g00336 Smso1g03597 . Taer4g02361 Fro14g01263 . Ftr2g00779 Fra18g01745 Fli3g00838 Stre1g04317 . . . . . . . . . . . . . . . . . . . . .
Hean1g00084 Cobi2g02261 Bial10g01291 Bial22g00885 . . Hetu1g00094 Hetu2g00154 Hetu3g00088 Amtr12g00343 Smso1g03599 Smso28g00490 . . . . . . Stre1g04318 . . . . . . . . . . . . . . . . . . . . .
Hean1g00085 Cobi2g02263 Bial10g01292 Bial22g00886 . . Hetu1g00098 Hetu2g00158 Hetu3g00091 Amtr12g00347 Smso1g03600 Smso28g00489 . . . . . . Stre1g04319 . Hean11g02599 Cobi6g01034 Bial12g02733 Bial24g02579 Dapi4g01859 Dapi31g02062 Hetu32g02197 Hetu31g02185 Hetu33g02143 Amtr07g06351 . . Taer4g02368 Fro13g01340 . . Fra13g01441 Fli9g01385 Stre1g04319 .
Hean1g00086 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00088 Cobi2g02264 Bial10g01293 Bial22g00887 . . Hetu1g00099 Hetu2g00160 Hetu3g00092 Amtr12g00348 Smso1g03601 Smso28g00488 Taer4g02369 Fro14g01266 Fso1g02074 Ftr2g00770 Fra18g01748 Fli3g00837 Stre1g04320 Mimi16g02089 . . . . . . . . . . . . . . . . . . . .
Hean1g00089 . . . . . . . . . Smso1g03602 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00090 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
7 135494715 135495134 + AtrifAMIRv0_Chr07g0514981 Amtr07g06351 6351
12 9659257 9659814 - AtrifAMIRv0_Chr12g0720601 Amtr12g00328 328
12 9849621 9849932 - AtrifAMIRv0_Chr12g0720681 Amtr12g00336 336
12 9941955 9942647 + AtrifAMIRv0_Chr12g0720751 Amtr12g00343 343
12 10012372 10012773 - AtrifAMIRv0_Chr12g0720791 Amtr12g00347 347
12 10064652 10071896 + AtrifAMIRv0_Chr12g0720801 Amtr12g00348 348
10 12854373 12854879 - g86881.t1 Bial10g01288 1288
10 12860556 12860861 - g86879.t1 Bial10g01290 1290
10 12868829 12869509 + g86878.t1 Bial10g01291 1291
10 12882716 12883093 - g86877.t1 Bial10g01292 1292
10 12887611 12892282 + g86876.t1 Bial10g01293 1293
12 57477448 57477981 - g35930.t1 Bial12g02731 2731
12 57487203 57487598 - g35932.t1 Bial12g02733 2733
22 8408292 8408774 - g147152.t1 Bial22g00882 882
22 8414555 8414860 - g147150.t1 Bial22g00884 884
22 8462570 8463250 + g147149.t1 Bial22g00885 885
22 8472693 8473070 - g147148.t1 Bial22g00886 886
22 8483856 8488548 + g147147.t1 Bial22g00887 887
24 56610515 56611048 - g68244.t1 Bial24g02578 2578
24 56615256 56615651 - g68245.t1 Bial24g02579 2579
2 69226340 69226855 - h2tg000016l_1.g4988.t1 Cobi2g02258 2258
2 69263663 69263929 - h2tg000016l_1.g4986.t1 Cobi2g02260 2260
2 69270570 69271247 + h2tg000016l_1.g4985.t1 Cobi2g02261 2261
2 69305065 69305421 - h2tg000016l_1.g4983.t1 Cobi2g02263 2263
2 69333999 69337893 + h2tg000016l_1.g4982.t1 Cobi2g02264 2264
6 8301366 8301785 + h2tg000031l_1.g19347.t1 Cobi6g01034 1034
4 115966918 115967427 - h1tg000180l.g132169.t1 Dapi4g01855 1855
4 116213509 116213928 - h1tg000180l.g132173.t1 Dapi4g01859 1859
31 101739383 101739793 - h2tg000063l.g12147.t1 Dapi31g02062 2062
3 22798827 22802613 - FliAMIRv0_Chr03g0081061 Fli3g00837 837
3 22889180 22889482 + FliAMIRv0_Chr03g0081071 Fli3g00838 838
3 22915561 22916118 + FliAMIRv0_Chr03g0081081 Fli3g00839 839
9 71132625 71133176 - FliAMIRv0_Chr09g0221501 Fli9g01384 1384
9 71165383 71165817 - FliAMIRv0_Chr09g0221511 Fli9g01385 1385
13 42665768 42666205 + FraAMIRv0_Chr13g0267491 Fra13g01441 1441
13 42675427 42675972 + FraAMIRv0_Chr13g0267501 Fra13g01442 1442
18 65770274 65770831 - FraAMIRv0_Chr18g0359411 Fra18g01744 1744
18 65801909 65802214 - FraAMIRv0_Chr18g0359421 Fra18g01745 1745
18 65838359 65842155 + FraAMIRv0_Chr18g0359451 Fra18g01748 1748
13 22906646 22907191 - FroAMIRv0_Chr13g0235181 Fro13g01336 1336
13 22917532 22917969 - FroAMIRv0_Chr13g0235221 Fro13g01340 1340
14 20210053 20210592 - FroAMIRv0_Chr14g0254161 Fro14g01262 1262
14 20221278 20221583 - FroAMIRv0_Chr14g0254171 Fro14g01263 1263
14 20250256 20253804 + FroAMIRv0_Chr14g0254201 Fro14g01266 1266
1 60273683 60274216 - FsoAMIRv0_Chr01g0020681 Fso1g02069 2069
1 60367762 60371529 + FsoAMIRv0_Chr01g0020731 Fso1g02074 2074
2 14349780 14353227 - FtrAMIRv0_Chr02g0036371 Ftr2g00770 770
2 14494440 14494745 + FtrAMIRv0_Chr02g0036461 Ftr2g00779 779
2 14537580 14538137 + FtrAMIRv0_Chr02g0036471 Ftr2g00780 780
6 89720532 89721089 - FtrAMIRv0_Chr06g0184391 Ftr6g02291 2291
1 1926943 1934153 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000931 Hean1g00081 81
1 1928886 1929278 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000941 Hean1g00082 82
1 1958125 1958598 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000951 Hean1g00083 83
1 1983549 1984391 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000961 Hean1g00084 84
1 1995912 2005858 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000971 Hean1g00085 85
1 2002753 2003067 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000981 Hean1g00086 86
1 2015420 2017066 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0000991 Hean1g00087 87
1 2036716 2050607 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001001 Hean1g00088 88
1 2054863 2058932 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001011 Hean1g00089 89
1 2059604 2064997 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001021 Hean1g00090 90
11 116306835 116307375 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496861 Hean11g02595 2595
11 116366361 116366774 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0496901 Hean11g02599 2599
1 3703674 3704216 - >Htub.h1tg003317l.g57.t1 Hetu1g00092 92
1 3747737 3748042 - >Htub.h1tg003317l.g58.t1 Hetu1g00093 93
1 3797869 3798567 + >Htub.h1tg003317l.g59.t1 Hetu1g00094 94
1 3840932 3841339 - >Htub.h1tg003317l.g63.t1 Hetu1g00098 98
1 3860196 3865467 + >Htub.h1tg003317l.g64.t1 Hetu1g00099 99
2 4625538 4626080 - >Htub.h1tg002382l.g191.t1 Hetu2g00151 151
2 4681001 4681306 - >Htub.h1tg002382l.g192.t1 Hetu2g00152 152
2 4731533 4732231 + >Htub.h1tg002382l.g194.t1 Hetu2g00154 154
2 4770544 4770945 - >Htub.h1tg002382l.g198.t1 Hetu2g00158 158
2 4782263 4786724 + >Htub.h1tg002382l.g200.t1 Hetu2g00160 160
3 3581457 3582194 - >Htub.h1tg004213l.g235.t1 Hetu3g00084 84
3 3655441 3655746 - >Htub.h1tg004213l.g237.t1 Hetu3g00086 86
3 3727513 3728211 + >Htub.h1tg004213l.g239.t1 Hetu3g00088 88
3 3770624 3771031 - >Htub.h1tg004213l.g242.t1 Hetu3g00091 91
3 3791535 3796785 + >Htub.h1tg004213l.g243.t1 Hetu3g00092 92
31 125084675 125085307 - >Htub.h1tg001293l.g265.t1 Hetu31g02183 2183
31 125343823 125344206 - >Htub.h1tg001293l.g267.t1 Hetu31g02185 2185
32 127264155 127264694 - >Htub.h1tg003616l.g27.t1 Hetu32g02196 2196
32 127509867 127510250 - >Htub.h1tg003616l.g26.t1 Hetu32g02197 2197
33 119588987 119590461 - >Htub.h1tg000866l.g420.t1 Hetu33g02140 2140
33 119844540 119844923 - >Htub.h1tg000866l.g417.t1 Hetu33g02143 2143
16 83019224 83023990 + KAD3338159.1 Mimi16g02089 2089
1 121130576 121131064 - KAI3829559.1 Smso1g03596 3596
1 121181945 121182250 - KAI3829560.1 Smso1g03597 3597
1 121209589 121210281 + KAI3829562.1 Smso1g03599 3599
1 121236314 121236703 - KAI3829563.1 Smso1g03600 3600
1 121266792 121271062 + KAI3829564.1 Smso1g03601 3601
1 121275081 121280188 + KAI3829565.1 Smso1g03602 3602
20 61591798 61592334 - KAI3742816.1 Smso20g01820 1820
28 13677183 13684926 - KAI3682768.1 Smso28g00488 488
28 13693751 13694140 + KAI3682769.1 Smso28g00489 489
28 13710248 13711105 - KAI3682770.1 Smso28g00490 490
28 13766624 13767151 + KAI3682775.1 Smso28g00495 495
1 129244605 129245416 - Streb.1G043100.1 Stre1g04310 4310
1 129280683 129281431 - Streb.1G043160.1 Stre1g04316 4316
1 129292657 129293373 - Streb.1G043170.1 Stre1g04317 4317
1 129308524 129309224 + Streb.1G043180.1 Stre1g04318 4318
1 129313428 129313823 - Streb.1G043190.1 Stre1g04319 4319
1 129370352 129376254 + Streb.1G043200.1 Stre1g04320 4320
4 53619233 53619775 - >KAK1428141.1 Taer4g02359 2359
4 53681405 53681701 - >KAK1428143.1 Taer4g02361 2361
4 53798719 53799147 - >KAK1428150.1 Taer4g02368 2368
4 53834884 53837777 + >KAK1428151.1 Taer4g02369 2369
       
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