AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04310 ATGCATATTATGAAAACCAGATCAAGATCGATGGTCCGCCGTCGAGCTTGGAACCTACTCCGGTTAGCCTTGTTATGGGCTCGAAAAGGTGGAGTCTTTGTGCTCAAGAAACGGCTCATGCTGGACCTGACTCATTTGGTCAAGAGTCTGGGTCAGTCCAAGAAAGGTAATGGTGCACTCCAATTTGGTGACCGGCAGCTATCGTTTGATGCGACCCCGATAATCCATGTTCGGATGCACCGACCCAACTCGATGCGGTTCCGGTTGCCTCATATTCCTTGCATCAACCCACATGTTGATTGTTCGGATATGTTTGAGTTTGGTGATGAGAGTGATCGGTACTCGTGTTGTGAAGCACGAACGAGTTTCTTGATCGCGAATGGTGAAGATTGTGATCGAGAGGATGATGAAGAAGTTGATGATGAATATGACCGAATTTGTGAGGAGAAAGAAGTGGGGATTGATCTTAAAGCCGAAGAGTTTATAGCCAACTTTTATGAACAACTTAAGCTTCAAAGACAAGTTAATACAAGAAGAAAACGTGATTAA 549 44.81 MHIMKTRSRSMVRRRAWNLLRLALLWARKGGVFVLKKRLMLDLTHLVKSLGQSKKGNGALQFGDRQLSFDATPIIHVRMHRPNSMRFRLPHIPCINPHVDCSDMFEFGDESDRYSCCEARTSFLIANGEDCDREDDEEVDDEYDRICEEKEVGIDLKAEEFIANFYEQLKLQRQVNTRRKRD 182
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04310 182 Pfam Cotton fibre expressed protein 154 174 IPR008480 -
Stre1g04310 182 PANTHER AVR9-CF-9 RAPIDLY ELICITED PROTEIN-RELATED 10 177 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04310 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5211442 Stre Stre1g04310 Stre-Chr1:129244605 Stre1g04316 Stre-Chr1:129280683