AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amtr12g00336 ATGGATGTAACCTATAATAATAATAATAACAGGCCGAGTAATTTCAGCTACCAAACGGACCGGAGGCTGGAGATAGTGAGTGGCAAAGGGAACCAAGTATATGCAGGTGGGAGGTCGCCGGAGTATACAGGGAGGACGTCGACGTCGTCGTCAGCAAAGCCTTGGGGAGGGTTTAGTGATCCAGAGAGTAAGAGGAAGAAGAGGATTGCTAAGTATAAAGTGTATACTATTGAAGGGAGAGTGAAGCAGTCGTTTAGGAATGGGATTCGTTGGATTAAGTCGAAGTGTTCGGATTTTATTCATGGGTTATGA 312 45.19 MDVTYNNNNNRPSNFSYQTDRRLEIVSGKGNQVYAGGRSPEYTGRTSTSSSAKPWGGFSDPESKRKKRIAKYKVYTIEGRVKQSFRNGIRWIKSKCSDFIHGL 103
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amtr12g00336 103 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED 10 102 - -
Amtr12g00336 103 MobiDBLite consensus disorder prediction 41 56 - -
Amtr12g00336 103 MobiDBLite consensus disorder prediction 28 63 - -
Amtr12g00336 103 Pfam Domain of unknown function (DUF3511) 58 102 IPR021899 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amtr12g00336 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
245350 Amtr Amtr11g03728 Amtr-Chr11:73467671 Amtr12g00336 Amtr-Chr12:9849621
245382 Amtr Amtr11g03814 Amtr-Chr11:74545395 Amtr12g00336 Amtr-Chr12:9849621
271199 Amtr Amtr12g00336 Amtr-Chr12:9849621 Amtr02g03205 Amtr-Chr2:68860630