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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial24g02578 ATGCAGATTGTGAAAACCAGATCAAGATCTGAGGTGAGCCGAAGAGCTTGGAACATACTCCGGTTAGCGTTGTTATGGGCACGAAAAGGTGGAGTCTTTGTGTTCAAGAAAAGGCTTATGCATGACTTGTCTCATTTTGTCAAGAACCATGGTCACTCTAAGAAAGGCAATGGCGCATTGCAATATGGTGACCGGCAGCTATCGTTTGATGCAACTCCTATAATCCATGTTAGGATGCACCGCCCCAACTCGATGAGGTTCCGCTTGCCTCACATCCCGTGCATTAACCCGCACGTTGATTGTTCGGATATGTTTGAGTTTGATGATGAGGTGAGTGATCGGTACTCGTGTTGTGAAGCAAGAAAGAGTTTCTTGATTGGTTATGGTGAAGAATATGATGAAGAAGGTGATGATGATGAGCAAATATGTGAAGAAGAAGAAGAGATGGAAATTGATGTGAAGGCTGAAGAGTTTATAGCTAACTTCTATGAGCAGCTTAAGCTTCAAAGGCAAGTTAACAAAAGAAGTGACTAA 534 42.88 MQIVKTRSRSEVSRRAWNILRLALLWARKGGVFVFKKRLMHDLSHFVKNHGHSKKGNGALQYGDRQLSFDATPIIHVRMHRPNSMRFRLPHIPCINPHVDCSDMFEFDDEVSDRYSCCEARKSFLIGYGEEYDEEGDDDEQICEEEEEMEIDVKAEEFIANFYEQLKLQRQVNKRSD 177
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial24g02578 177 Pfam Cotton fibre expressed protein 150 171 IPR008480 -
Bial24g02578 177 PANTHER AVR9-CF-9 RAPIDLY ELICITED PROTEIN-RELATED 11 173 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial24g02578 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
184890 Bial12g02731 Bial24g02578
361543 Bial10g01288 Bial24g02578
363613 Bial12g02731 Bial24g02578
374165 Bial22g00882 Bial24g02578
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
707299 Bial Bial22g00882 Bial-Chr22:8408292 Bial24g02578 Bial-Chr24:56610515
782958 Bial Bial10g01287 Bial-Chr10:12851078 Bial24g02578 Bial-Chr24:56610515
794752 Bial Bial12g02731 Bial-Chr12:57477448 Bial24g02578 Bial-Chr24:56610515
840023 Bial Bial22g00881 Bial-Chr22:8405015 Bial24g02578 Bial-Chr24:56610515