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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01855 ATGAAAAAGAGGTCAAGATCCGATATGAGCCGGAGGGTGTGGCGCATGTTACGGTTAGCCTTGTTATGGGCTAGGAAAGGCGGAATCAAGAAAGGGTTTATGCTTGACTTGTCTCATTATGTGAAGACTCTCGGTCAATCGAAAAAGGGCAATGGTTCTCTCCAATATGGTGACCGACAGCTATCGTTTGGCGCCACGCCAATAATTCATGTTAGGATGCATCGGCCCAACTCCATGAGGTTCCGGTTGCCTCACATTCCTTGTATTAATCCACATGTTGATTGCTCGGATATGTTTGATTTCGACGAGGAGAGTGATCGGTACTCGTGTTGTGAAGCGAGGAAGAGTTTCTTGATCGGAAAAGGTGAAGAAGAGTATGAATATGACATTGACCAAACATGTGAGAAAGAAAATATGGGGATTGATCTCAAGGCTCAACAGTTTATAGAGAATTTTTATGAGCAGCTTAAGCTTCAAAGGCAACTCAACACTAGAAGAAAACGCGACTAA 510 43.73 MKKRSRSDMSRRVWRMLRLALLWARKGGIKKGFMLDLSHYVKTLGQSKKGNGSLQYGDRQLSFGATPIIHVRMHRPNSMRFRLPHIPCINPHVDCSDMFDFDEESDRYSCCEARKSFLIGKGEEEYEYDIDQTCEKENMGIDLKAQQFIENFYEQLKLQRQLNTRRKRD 169
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01855 169 Pfam Cotton fibre expressed protein 141 161 IPR008480 -
Dapi4g01855 169 PANTHER AVR9-CF-9 RAPIDLY ELICITED PROTEIN-RELATED 8 164 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01855 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1958565 Dapi Dapi4g01854 Dapi-Chr4:115930042 Dapi4g01855 Dapi-Chr4:115966918
1958566 Dapi Dapi4g01855 Dapi-Chr4:115966918 Dapi4g01856 Dapi-Chr4:116055494