AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g02140 ATGCAGACGTCTAAGCCCAAATACAGCTACAATCAGCTAAGCCCATGTAACCTCACCAAATCCAGATGGATATTTGGTAAGAAAGAAAGCGTGGGTGGCTGTAGCGGTGGCACTGGTGACTGGCCCGCGTACAGCCGTATTCCCGACACGCACCTCATTCATATATGTATATATATACAACATCCTTATATGCATCAACTCATCAAAAACTTTAAAAAACCTCATTTGTTCACTGCTAGAAAGCTGGGCATTTGCGACCGCTTCAACAGTTCCAACAAAAACATGCAGATTACTAAAACAAGATCAAGATCCCAAGTAGTGAGCCGTAGGGCTTGGCAGATACTACGGTTAGCATTGTTATGGGCTAGAAAAGGTGGAGTCTTTGTGGTGAAGAAAAGGCTCATGCATGATTTATCTCATTTTGTCAAGAGCCATGGTCAATCTAAAAAAGGCAATGGTGCACTCCAATATGGTGACAGGCAGCTATCATTTGATGCAACTCCTATCATCCATGTTAGGATGCACCGCCTCAACTCGATGCGCTTCCGCTTGCCTCACATCCCCTGCATTAACCCACACGTTGATTGTTCGGATATGTTTGAGTTTGATGACGAGAGTGTTCACTACTCGTTTTGTGAAGCAAGAAAGAGTTTCTTGATTGGTAATGGTGAAGAGTATAATGAAGAAGAAGATGATGATGAATATGACCAAATGTGTGAGGAACAAGAAATGGGAATTGATGTCAAGGCTGAGGAGTTTATAGCCAACTTCTATGAGCAGCTTAAGCTTCAAAGGCAACTCAACACAAGAAGAATCCACTAA 822 42.7 MQTSKPKYSYNQLSPCNLTKSRWIFGKKESVGGCSGGTGDWPAYSRIPDTHLIHICIYIQHPYMHQLIKNFKKPHLFTARKLGICDRFNSSNKNMQITKTRSRSQVVSRRAWQILRLALLWARKGGVFVVKKRLMHDLSHFVKSHGQSKKGNGALQYGDRQLSFDATPIIHVRMHRLNSMRFRLPHIPCINPHVDCSDMFEFDDESVHYSFCEARKSFLIGNGEEYNEEEDDDEYDQMCEEQEMGIDVKAEEFIANFYEQLKLQRQLNTRRIH 273
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g02140 273 Pfam Cotton fibre expressed protein 246 267 IPR008480 -
Hetu33g02140 273 PANTHER AVR9-CF-9 RAPIDLY ELICITED PROTEIN-RELATED 105 268 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g02140 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
300197 Hetu31g02183 Hetu33g02140
301195 Hetu32g02196 Hetu33g02140
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3370944 Hetu Hetu33g02140 Hetu-Chr33:119588987 Hetu3g00084 Hetu-Chr3:3581457
3532388 Hetu Hetu1g00091 Hetu-Chr1:3698728 Hetu33g02140 Hetu-Chr33:119588987
3581227 Hetu Hetu2g00150 Hetu-Chr2:4620603 Hetu33g02140 Hetu-Chr33:119588987
3581244 Hetu Hetu2g00066 Hetu-Chr2:2160765 Hetu33g02140 Hetu-Chr33:119588987
3620636 Hetu Hetu3g00083 Hetu-Chr3:3576425 Hetu33g02140 Hetu-Chr33:119588987
3625264 Hetu Hetu31g02183 Hetu-Chr31:125084675 Hetu33g02140 Hetu-Chr33:119588987
3627213 Hetu Hetu32g02196 Hetu-Chr32:127264155 Hetu33g02140 Hetu-Chr33:119588987