AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu1g00073 ATGGCGCTCAAACACCATAACTTCTTAACCTTCTGCTTCTTTTTCATCGTCTTCTCGATTCACACGGCCACACTCGTGTCCGCCGATGCGATCCAAGGTTGCGGTGGTTTCATCGAGGCGACCTCATCTTTGATCAAGTCAAGGAAACCTACCGATACGAAATTGGACTATTCGCATGTCACGGTTGAGCTGCGTACTTTGGATGGCTTGGTGAAGGAGCGGACACAATGTGCTCCTAATGGTTACTACTTCATCCCTGTTTATGATAAGGGTTCTTTTGTTATCAAAGTTAAAGGACCAGAAGGATGGTCATGGAACCCAGATCAGGTTCCCGTGCTTGTCGATCATGCTGGCTGTAATGGCAACGAAGATATAAATTTTCGGTTTACAGGGTTCAGTATTAGTGGGAAAGTTGTGGGAGCCGTTGGTGGTGCAAGTTGTTCATCTACCAACGGTGGTCCATCAAACGTCAATGTCGAGCTTTTGAATTCCAATGGGGATGTTGTATCTTCTGTTTTTACATCAGTAGCTGGGAGATACTCTTTCACCAATATAATTCCAGGACGATATAACCTACGGGCATCCCATAATGACTTGAGTATTGAAGTTAAAGGCTCAACAGAGGTTGAATTGGGATTTGGAAATATCCAAGTTGACGATGTCTTTTTTGTCACTGGTTATGATATTCGTGGATCGGTAGTTGCACAAGGAAACCCTATTTTGGGGGTTCACTTTTATCTGTACTCTAACGATGTTAAGGAAGTGCACTGCCCACAGGGTTCTGGTAACCCATCTGGAGATAGAACCGCTCTTTGTCATGCAATATCTGACGTTGATGGAAAATTTAATTTCAAATCAATTCCATGCGGTGTTTATGAGCTTATACCTTATTATAAGGGCGAGAATACAGTTTTCGATGTTTCTCCTCCCTCTGTCACTGTGACTGTTCAGCATGATCATGCAACAGTATCTGAAAAGTTTCAGGTTACCGGCTTTTCTGTTGGTGGCCGTGTTGTTGATTCCGAGGGCAAGGGAGTCGATGGCGTAAAAATTGTGGTGGATGGTATTGAGAGGTCTGTTACTGATAAAAACGGATATTATAAGCTCGACCAGGTTACATCCAAACAGTATCTGATTGAAGCGAAAAAGGAGCACTACAAGTTTGACAAATTGATTGACTTCATGGTTTTACCAAATATGGCATCGGTTGCTGATATCAAAGCAGTGTCTTATGATGTTTGTGGCTCAGTGCACACAGTTGATTCTGGTTACAAATCAAAAGTGGCTCTGACTCATGGACCAGATAATGTTAAGCCGCAAATGAAACAAACTGATGATAACGGCTATTTTTGCTTTGAGGTTCCACCCGGTGACTATCGATTATCGGCTATTGCAGTCACACCTGAAACTACACCGCATCTTTTATTCTCACCACCACATATTGATGTTAACGTCAATGGTCCACTGCTGTCACCGAAATTTTATCAGGCACAAGTTAATGTAGGTGGCTCGGTAACTTGCAAAGAAAATTGTGATTCATCTGTTTCTGTTGATCTTGTGAGATTGGGTGATAAAAGAAATGAAGAAAGGCAGACAGTCGGTTTGACTTTGACTGACCAAAGTAGTGAATTTTTGTTTGAAAATGTCCTGCCTGGAAAATATAAGCTTGAGGTCAAACACGTTTCTAAAGGAGCTAAATCCGGAGAAGATAACTGGTGTTGGGAACAGAGCTCGGTACCTCTTAATGTTGGAACCGAAGACGTTAAAGGGGTTAATTTTGTTCAGAAAGGTTATTGGGTTAACTTAGTTTCTACTCACGATGTAGATGCTTATCTGCGTCAATCTCATGGTTCACGTGTGGATCTGAAAATTAAGAAAGGTTCTCAGCGCATATGCGTTGAATCTCCTGGAGCGCATGAACTTCACTTTGTAAACTCGTGTATACTTTTCAGGAACTCACCTGTGAAAATTGACACGGCCGATACATCGCCTATCTATCTGAAAGGAGAGAAGTATCTACTTTTAGGAGAAATTAAGGTTGACTTGACCTCACAAAATGGCGTCGACCAGTTACCGAAAAATCTAGCTGTTGACATTTTGAACGATGAAGGAACGGTTATCGATGGCGCTACTGCAAAATTTGTTAATGAGAACGAACAATCAAATAAAGCTCTTTATGAATATAAAGTATGGGCAAATCCTGGAGAAAAACTTACATTTGCACCCCGTGATATTCGGAGCGGAAATGAAAAGAAGATTTTATTTTATCCTAGACAACATCAGGTCAAAGTGGGACAAGACGGCTGTCAAGCGCTACCTCCGTTTTCCGGACGACTCGGGTTGTACATTGAAGGATCGGTTTCTCCCCCACTTCCCGATGTTATTATTCGCATCATAGCTTCCGGAGATAGTCAAAATGGTCAAATCAAGAAAAACGAATTGGCATTCGAAACGACTACAAATGCAGACGGGTTGTTCGTTGGTGGACCCCTATATGATGACATCACCTACCATACCCAAGCTTCAAAGGCCGGTTATCATGTAAAGGAACTTGGATCAAATTCCTTTTCGTGTCAGAAGCTAGGGCAAATCTCGGTTCGTATACATTCTAAAGAAGGTGCCAATGATTTATTTCCGTCGGTATTGCTATCGTTAAGCGGGGAAGACGGTTATAGAAATAACTCGATATCCGCTGCTGGTGGAACTTTCGTATTTGATAATTTATTTCCTGGAAGTTTTTATCTCCGTCCTCTGTTAAAAGAGTATGCTTTCTCACCATCCGCACAAGCAGTTGAACTCGGGTCCGGTGAGTCCACCGAAGTCGTCTTCCACGCCACACGTGTTGCTTACAGTGCCATGGGTGTGGTTACTCTGTTATCTGGTCTACCAAAAGAAGGCGTTTCGGTCGAGGCCCGTTCCGACTCAAAAGGTTATTATGAAGAAACCGTCACAGATTCATCGGGAAGTTACCGTCTAAGGGGACTTCATCCGGATACGACTTACACGATAAAAATAGCAAAGACAAACGCGTTTGGCGCCTCTAACATCGAACGTGCTTCCCCAGAATCTGTTGAAGTCAAGGTTGGATACGAAGATATCAAGGGGTTAGACTTTTTGGTTTTCGAGCAGCCAGAAATAACCTTATTAACGGGAACGGTTCAAGGAAGCGGGAATAAAGAGTTGCATGATCACCTAAAGTTGGAAATTAGATCGGCTAGTGATCCATCAAATATCGAATCGTTGTTACCTTTGTCTATTTCAAACTTCTTCCAGGTAAAGGGTTTGCCTAGGGGCAAACATCTTCTGCAGCTTCGGTCTACGTTAACACCACGCACCCTCAGATTCGAATCTGACGTCATTGAGGTTGATTTGGAGAAAAATACCCAAGTTTATGTGGGTCCCTTGACGTACAGAGTTGAAGATGATCACCATAAACAGGAGTTGACTCCGGCACCCGTGTATCCACTCATTATTGGAGTATTAGTGATTGCGTTATTTATCAGCATGCCAAGATTAAAAGACATGTACCAAAGCAATGTAGGAGTACTGGTACCGGGACCTAGTGCAACGACGAAGAAAGCCGTGCGAAGAAAGACTTACTAA 3603 42.77 MALKHHNFLTFCFFFIVFSIHTATLVSADAIQGCGGFIEATSSLIKSRKPTDTKLDYSHVTVELRTLDGLVKERTQCAPNGYYFIPVYDKGSFVIKVKGPEGWSWNPDQVPVLVDHAGCNGNEDINFRFTGFSISGKVVGAVGGASCSSTNGGPSNVNVELLNSNGDVVSSVFTSVAGRYSFTNIIPGRYNLRASHNDLSIEVKGSTEVELGFGNIQVDDVFFVTGYDIRGSVVAQGNPILGVHFYLYSNDVKEVHCPQGSGNPSGDRTALCHAISDVDGKFNFKSIPCGVYELIPYYKGENTVFDVSPPSVTVTVQHDHATVSEKFQVTGFSVGGRVVDSEGKGVDGVKIVVDGIERSVTDKNGYYKLDQVTSKQYLIEAKKEHYKFDKLIDFMVLPNMASVADIKAVSYDVCGSVHTVDSGYKSKVALTHGPDNVKPQMKQTDDNGYFCFEVPPGDYRLSAIAVTPETTPHLLFSPPHIDVNVNGPLLSPKFYQAQVNVGGSVTCKENCDSSVSVDLVRLGDKRNEERQTVGLTLTDQSSEFLFENVLPGKYKLEVKHVSKGAKSGEDNWCWEQSSVPLNVGTEDVKGVNFVQKGYWVNLVSTHDVDAYLRQSHGSRVDLKIKKGSQRICVESPGAHELHFVNSCILFRNSPVKIDTADTSPIYLKGEKYLLLGEIKVDLTSQNGVDQLPKNLAVDILNDEGTVIDGATAKFVNENEQSNKALYEYKVWANPGEKLTFAPRDIRSGNEKKILFYPRQHQVKVGQDGCQALPPFSGRLGLYIEGSVSPPLPDVIIRIIASGDSQNGQIKKNELAFETTTNADGLFVGGPLYDDITYHTQASKAGYHVKELGSNSFSCQKLGQISVRIHSKEGANDLFPSVLLSLSGEDGYRNNSISAAGGTFVFDNLFPGSFYLRPLLKEYAFSPSAQAVELGSGESTEVVFHATRVAYSAMGVVTLLSGLPKEGVSVEARSDSKGYYEETVTDSSGSYRLRGLHPDTTYTIKIAKTNAFGASNIERASPESVEVKVGYEDIKGLDFLVFEQPEITLLTGTVQGSGNKELHDHLKLEIRSASDPSNIESLLPLSISNFFQVKGLPRGKHLLQLRSTLTPRTLRFESDVIEVDLEKNTQVYVGPLTYRVEDDHHKQELTPAPVYPLIIGVLVIALFISMPRLKDMYQSNVGVLVPGPSATTKKAVRRKTY 1200
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu1g00073 1200 Gene3D Immunoglobulins 146 221 IPR013783 -
Hetu1g00073 1200 FunFam Carbohydrate-binding-like fold 148 220 - -
Hetu1g00073 1200 SUPERFAMILY Starch-binding domain-like 950 1037 IPR013784 GO:0030246(InterPro)
Hetu1g00073 1200 Pfam BOS complex subunit NOMO1-like, beta sandwich domain 780 854 IPR055073 -
Hetu1g00073 1200 Pfam BOS complex subunit NOMO1-like, first beta sandwich domain 51 127 IPR055075 -
Hetu1g00073 1200 SUPERFAMILY Cna protein B-type domain 875 935 - -
Hetu1g00073 1200 SUPERFAMILY Carboxypeptidase regulatory domain-like 333 425 IPR008969 -
Hetu1g00073 1200 Gene3D Immunoglobulins 963 1027 IPR013783 -
Hetu1g00073 1200 PANTHER CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING 25 1178 IPR051417 GO:0005789(PANTHER)
Hetu1g00073 1200 Gene3D - 334 413 - -
Hetu1g00073 1200 SUPERFAMILY Cna protein B-type domain 148 199 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu1g00073 K26500 BOS complex subunit NOMO
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Event-related genes

Select Gene_1 Gene_2 Event_name
266762 Hetu1g00073 Hetu2g00133
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3323002 Hetu Hetu1g00073 Hetu-Chr1:3331116 Hetu2g00054 Hetu-Chr2:1793292
3523622 Hetu Hetu45g02599 Hetu-Chr45:153470014 Hetu1g00073 Hetu-Chr1:3331116
3530500 Hetu Hetu1g00073 Hetu-Chr1:3331116 Hetu3g00068 Hetu-Chr3:3283734