AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01732 ATGGCGCTTAAGCACCACATCATCTTAAGCTACTACTTCGTGTTCATCGCCTTCACTATACACACATCTACACTCGTTTCCGCCGATGCGATCCAAGGTTGCGGTGGTTTCGTCGAGGCGAGCTCGTCGTTGATCAAGGCTAGGAAGCCAACGGATGCGAAATTGGACTATTCGCATATCACGGTTGAGCTGCGTACTTTGGATGGCTTGGTGAAGGATCGAACGCAATGTGCTCCGAATGGTTACTACTTCATCCCTGTTTATGATAAGGGTTCTTTTGTTATCAAAATTAAAGGACCAGAAGGATGGTCATGGGACCCAGATCAGGTTCCCGTGCTTGTCGATCATACTGGCTGTAATGGCAACGAAGATATAAATTTTCGGTTTACAGGGTTTAGTATTAGTGGAAAAGTTGTTGGAGCAGTTGGTGGTGCAAGTTGTCCGTCTACAGATGGCGGTCCGTCAAATGTAAAGGTTGAGCTTTTGAATTCCAATGGGAATGTTGTATCTTCTGTTTTTACATCAGTTGCTGGACGTTACTCTTTCACCAATATTAATCCAGGACGATATAACATACGGGCATCCCATGATGACTTAAATATTGAAGTTAAAGGTTCAACGGAGGTTGAAGTGGGATTTGGAAATAGCCAAGTTGATGATATCTTTTTTGTCTCTGGTTATGATATCCGTGGGTTGGTAGTTGCACAGGGAAACCCTATTTTGGGGGTTCACTTTTATCTGTACTCTGATGATGTTAAACAAGTGCACTGCCCACAGGGTTCTGGTAACCCATCTGGAGATAGAACTGCTCTCTGTCATGCAATATCTGATGTTGATGGAAAATTCAATTTTAAGTCAATTCCATGCGGTGTTTATGAGCTTATACCTTATTATAAGGGTGAGAATACAATCTTTGATGTGTCCCCTCCCTCTGTCACTGTGACTGTTCAACATGATCATGCAACAGTATCTGAAAAGTTTCAGGTTACTGGGTTTTCTGTTGGGGGTCGTGTTGTTGATTCAGATGGCAAGGGAGTGGATGGTGTGAAAATTGTGGTGGATGGTATTGAGAGGTCCGTCACTGATAAAGAAGGATATTATAAGCTTGACCAGGTTACATCTAAACAGTATCTGATTGAAGCAAAAAAGGAGCACTACAAGTTTGACAAATTGATTGACTTCATGGTTTTACCAAATATGGCATCAGTTGCTGATATCAAAGCAGTGTCATATGATGTTTGTGGCTTAGTGCAGATGGTTGATTCTGGTTCCAAAGCAAAAGTGGCTCTGACTCATGGACCACATAATGTTAAACCACAAATGAAACAAACTGATGATAAAGGCTATTTCTGCTTTGAGGTTCCACCTGGTGATTACCGGTTATCAGCTATTGCAGTTACACCTGAAAATACTCCGCATCTTTTATTTTCACCCCAACATATTGATGTCAATGTCAATGGCCCATTGCTGTCACTGAATTTCTATCAGGCACAAGTTAATGTAGGTGGTTCGGTATCTTGCAAAGAAAAATGTGATTCATCTGTTACTGTTGATCTTGTGAGATTGGATGCTAAACGCAATGAAGAAAGGCAGACAGTTGGTTTGACTGACCAAAGTAGTAATTTTTTGTTTCAAAATGTCTTACCTGGAAAATATAAGCTTGAGGTCAAACACCTTTCTAAAGGAGCTATATCTGGAGAAGATAATTGGTGTTGGGAACAAAACTCCATACTTATTAATGTTGGAACAGAAGATGTTAAAGGGATTAACTTTGTTCAGAAAGGTTATTGGGTTAACTTAGTTTCCACTCATGATGTAGATGCACATCTGCATCAATCATATGGTTCCCGCGTGACTCTGAAAATCAAGAAAGGTCCTCAGCAAATATGCATTGAATCTCCTGGAGTGCATGAACTCCACTTTGTGAACTCGTGTATACATTTTGGGAGTTCGCCTGTGAAAATTGACACTGCCAACACATCACCTATCTATCTAAAAGGAGAGAAGTATCTACTCCAAGGAGAAATTAAGGTTGAATTGACATCACAAAATGACGTTGACAAGTTACCTAAAAATCTAGTGGTTGACATTTTGAACGATGAAGGAAAAGTTATTGATGGCAGTACTGCGAAATTTGTTGTCAGTGAGAATGAACAATCAAATACAGCTCTTTATGAATATAAAATATGGGCAAATCCTGGAGAAAAACTTACATTTGTGCCTCGGGATATTCGGAGCGGAAATGAAAAAAAGATCTTATTTTATCCTAGACAACATCAGGTTAAAGTGGCACAAGACGGCTGTCAAGTTGTTCCTCCTTTTGCTGGACGACTTGGGTTGTACATTGAAGGATCAGTTTCTCCTCCGCTTCCAGATGTTATTATTAGAATCATAGCTTCTGGGGATAGTCAAAATGCTCAACTCAAGAAAAATGAATTGGCCTATGAAACAACTACAAGCACAGATGGCTCTTTTATTGGTGGACCGCTATATGATGACATCACTTACCATACCCAAGCTTTAAAGCCTGGTTATCATGTAAAGGAAATTGGACCCAATTCCTTTTCGTGCCAGAAGCTTGGTCAAATATCTGTTCGTATACATTCTAAAGAAGATGCCAATGAATTATTTCCCTCGGTGTTGTTATCATTAAGCGGGGAAGATGGTTATAGAAATAACTCGATATCTGCTGCTGGTGGAACTTTTGTATTTGATAATCTGTTTCCAGGAAGTTTTTATCTCCGTCCTCTGCTAAAGGAGTATGCTTTCTCACCATCAGCACAAGCAGTTGAACTTGGGTCTGGGGAGTCCACGGAAGTTGTCTTCCAAGCTACACGCGTTGCTTACAGTGCCATGGGTGTGGTTACTCTATTATCTGGTCTACCAAAAGAAGGCGTTTCAGTCGAGGCTCGCTCGGACACAAAAGGTTATTATGAGGAAACTGTCACAGATTCATTAGGAAATTATCGCCTAAGGGGACTTCACCCTGATACCACCTACACAATTAAAATTGGAAAAATAAATGGATTTGGCACCTCTAACATTGAACGGGCTTCCCCAGAATTTGTTGAAGTCAAGGTTGGCTATGAAGATATCAAAGGACTAGACTTTTTGGTTTTTGAGCAGCCGGAAATAACTCTATTAACTGGCATTGTTCGTGAAATCAGTACTAAAGATTGGTTCACTGCAAGCAGTAATAAAGGGGTGTATGAACACCTACAGTTGGAAATAAGATCGGCTAGTGATCCATCCAATATCGAATCATTGTCACCTGTGTCAATTTCAAACTTCTTCCAGGTAAAGGGTTTGCCCAGGGGCAAACATCTTCTGCAGCTTCGGTCTACTCTAACACCACGTACCCTCAGATTTGAATCTGAAGTGATTGAGGTTGATTTGGAGAAAAATACCCAAGTTGATGCGGGTTTCTTGAGATTCAAAGTTGAAGATGATCACCATAAACAGGAATTGACTCCGGCACCTGTTTATCCACTCATTATTGGAGTATTAGTGATTGCATTATTAATCAGCATGCCAAGATTAAAAGACGTATACCAAAGCAATGTAGGAGTATTGGTACCGGGACCCAGTGCTTCAACGAAGAAAGTCGTGAGGAAAAAGACTTACTGA 3627 40.64 MALKHHIILSYYFVFIAFTIHTSTLVSADAIQGCGGFVEASSSLIKARKPTDAKLDYSHITVELRTLDGLVKDRTQCAPNGYYFIPVYDKGSFVIKIKGPEGWSWDPDQVPVLVDHTGCNGNEDINFRFTGFSISGKVVGAVGGASCPSTDGGPSNVKVELLNSNGNVVSSVFTSVAGRYSFTNINPGRYNIRASHDDLNIEVKGSTEVEVGFGNSQVDDIFFVSGYDIRGLVVAQGNPILGVHFYLYSDDVKQVHCPQGSGNPSGDRTALCHAISDVDGKFNFKSIPCGVYELIPYYKGENTIFDVSPPSVTVTVQHDHATVSEKFQVTGFSVGGRVVDSDGKGVDGVKIVVDGIERSVTDKEGYYKLDQVTSKQYLIEAKKEHYKFDKLIDFMVLPNMASVADIKAVSYDVCGLVQMVDSGSKAKVALTHGPHNVKPQMKQTDDKGYFCFEVPPGDYRLSAIAVTPENTPHLLFSPQHIDVNVNGPLLSLNFYQAQVNVGGSVSCKEKCDSSVTVDLVRLDAKRNEERQTVGLTDQSSNFLFQNVLPGKYKLEVKHLSKGAISGEDNWCWEQNSILINVGTEDVKGINFVQKGYWVNLVSTHDVDAHLHQSYGSRVTLKIKKGPQQICIESPGVHELHFVNSCIHFGSSPVKIDTANTSPIYLKGEKYLLQGEIKVELTSQNDVDKLPKNLVVDILNDEGKVIDGSTAKFVVSENEQSNTALYEYKIWANPGEKLTFVPRDIRSGNEKKILFYPRQHQVKVAQDGCQVVPPFAGRLGLYIEGSVSPPLPDVIIRIIASGDSQNAQLKKNELAYETTTSTDGSFIGGPLYDDITYHTQALKPGYHVKEIGPNSFSCQKLGQISVRIHSKEDANELFPSVLLSLSGEDGYRNNSISAAGGTFVFDNLFPGSFYLRPLLKEYAFSPSAQAVELGSGESTEVVFQATRVAYSAMGVVTLLSGLPKEGVSVEARSDTKGYYEETVTDSLGNYRLRGLHPDTTYTIKIGKINGFGTSNIERASPEFVEVKVGYEDIKGLDFLVFEQPEITLLTGIVREISTKDWFTASSNKGVYEHLQLEIRSASDPSNIESLSPVSISNFFQVKGLPRGKHLLQLRSTLTPRTLRFESEVIEVDLEKNTQVDAGFLRFKVEDDHHKQELTPAPVYPLIIGVLVIALLISMPRLKDVYQSNVGVLVPGPSASTKKVVRKKTY 1208
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01732 1208 SUPERFAMILY Cna protein B-type domain 150 200 - -
Fra18g01732 1208 Gene3D Immunoglobulins 146 226 IPR013783 -
Fra18g01732 1208 SUPERFAMILY Cna protein B-type domain 953 1015 - -
Fra18g01732 1208 Pfam BOS complex subunit NOMO1-like, first beta sandwich domain 51 127 IPR055075 -
Fra18g01732 1208 Pfam SdrD B-like domain 152 196 IPR033764 -
Fra18g01732 1208 Pfam BOS complex subunit NOMO1-like, beta sandwich domain 779 851 IPR055073 -
Fra18g01732 1208 SUPERFAMILY Cna protein B-type domain 874 934 - -
Fra18g01732 1208 Gene3D - 334 411 - -
Fra18g01732 1208 SUPERFAMILY Carboxypeptidase regulatory domain-like 333 427 IPR008969 -
Fra18g01732 1208 PANTHER CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING 23 1186 IPR051417 GO:0005789(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01732 K26500 BOS complex subunit NOMO