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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02076 ATGGTCAGAAAGAGGGCAGCTTCCGATATGGAACTCCAAACGCCCGCCGGAGACTACCACCACCGGCTGTTACGTCGACCACAGCCGGCGAATCCACTCGACATTGTGGGTTTTAGTGGATTATCATCGTCGTCGCAGGCAACGGCTGCTCAGAACGATAACAACAATGTGAACAGGCTTGCCGCCGGTGCTGACCACCCACCCAACTACTCCACTATGACGCTACCGTCATCATCGTCAGCTCATCTGATGTCATTATCCACCACCACCTGCTCAACTAATAACATCGATTCTCATTCTTCTGCAACCCTAAAAACTAACCCTCCTCCGTTATGTGTGTTTTCCGGTCTGCCTTTGTTTCCACCGGACAAAAGTTATCATCATTTGTCGAATTTGAGTTCTGTTAACCCTACAGTCGCCGGAGTGGTACCGTCAAGTAATAGTAGCAGCACCATCGTCAACCCTAACGCCGGGATGGCGTTCTTGACAGGCGGTGGTAGTAACAGCACCGGCATGCCGGCCGACGACTCCATGTCGGCGACGGCGTGGATAGATAACATCATAAAAGACTTGATTCATAGTTCGACAGATGTTTCAATACCTCATCTGATTCAGAACGTGAGAGAAATTATTCACCCTTGTAACCCTAATCTTGCCACCTTGCTCGAATACAGGCTTCGATCATTGATGGATCTTCCGCCGGAGTTAGTAGAGCAGCAATCTGTTCATAATCCTGCTGAAACTTTCCGGTCTAGGGTTCAGGTGAGAGGAAAAGACGCACAAACGCAATTACGTAACAATCCGGCGATCGACGGTATGTTTCCACTGCCTCCGGCGGATTTACAACATCTGGATTGGACTGGTGATGATTACAACACCACCGGGGGACCTCCTCCTGCTGCAGTTCTTCCGTCCTCAAACAACGAACCACAGCAACAGCTGCATGAATCTCCGCCGCCACATCCACCGTCGGCAACTGATCAAAGCACGGCAACAGCATCAGCACAAGCGGCGGCAATGGCGTTACGAGAGAAGAAACGAGAAGAGCTCCGGCAGCAAAAACGAGACGAAGAAGGCTTACACCTTCTTACCCTACTTCTACAATGCGCAGAAGCAGTTTCCGACGACAACTTCGACGAAGCCAACAAAATGCTACTCGAAATCTCGGAGCTCTCAACGCCGTACGGCACGGCCGCACAGCGCGTCGCCGCCTACTTCTCGGAAGCCATGTCCGCGCGGCTGACAACCTCTTATCTCGGAATCTACACCACCCTTCCGCCCAATGCCGCCGGTTCTCTCGGCCTGAAAAAGATAACCAAGAGGGAAGCTGTTGCTGTTCACTGGTTGCAGCATTCTTTATATGATGTCACCGGATCCGACACCAATACTTTATGGTTCCTCCAGAGATTGGCTCCAAAAGTGGTGACAGTTGTGGAGCAGGATCTGAGCCATGCGGGGTCGTTTTTGGGAAGATTTGTAGAAGCAATTCACTATTACTCAGCATTGTTCGACTCGTTGGGGTCAAGCTATGGGGAAGAGAGTGAAGAAAGGCATGTGGTGGAACAACAGTTGCTGTCAAAGGAGATCAGGAACGTGTTGTCGATAGGCGGCCCGTCAAGGACTGGGGAAGTGAAGTTCAATAATTGGAGGGAGAAGCTGGAGCAATGTGGGTTCAAGGGTATATCTTTAGCAGGAAATGCTGCAGCCCAAGCAACACTTTTGTTAGGGATGTTTCCTTCTAATGGCTACACTTTGGTGGAGGATAAGGGCACCCTTAAGCTTGGATGGAAAGACCTTTGTTTGCTTACGGCATCTGCTTGGAGACCTTAG 1830 50.6 MVRKRAASDMELQTPAGDYHHRLLRRPQPANPLDIVGFSGLSSSSQATAAQNDNNNVNRLAAGADHPPNYSTMTLPSSSSAHLMSLSTTTCSTNNIDSHSSATLKTNPPPLCVFSGLPLFPPDKSYHHLSNLSSVNPTVAGVVPSSNSSSTIVNPNAGMAFLTGGGSNSTGMPADDSMSATAWIDNIIKDLIHSSTDVSIPHLIQNVREIIHPCNPNLATLLEYRLRSLMDLPPELVEQQSVHNPAETFRSRVQVRGKDAQTQLRNNPAIDGMFPLPPADLQHLDWTGDDYNTTGGPPPAAVLPSSNNEPQQQLHESPPPHPPSATDQSTATASAQAAAMALREKKREELRQQKRDEEGLHLLTLLLQCAEAVSDDNFDEANKMLLEISELSTPYGTAAQRVAAYFSEAMSARLTTSYLGIYTTLPPNAAGSLGLKKITKREAVAVHWLQHSLYDVTGSDTNTLWFLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSKEIRNVLSIGGPSRTGEVKFNNWREKLEQCGFKGISLAGNAAAQATLLLGMFPSNGYTLVEDKGTLKLGWKDLCLLTASAWRP 609
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02076 609 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 345 417 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009630(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0051457(PANTHER)|GO:0090610(PANTHER)
Mimi16g02076 609 ProSiteProfiles GRAS family profile. 353 608 IPR005202 -
Mimi16g02076 609 MobiDBLite consensus disorder prediction 299 314 - -
Mimi16g02076 609 MobiDBLite consensus disorder prediction 241 335 - -
Mimi16g02076 609 Pfam GRAS domain family 363 429 IPR005202 -
Mimi16g02076 609 Pfam GRAS domain family 437 608 IPR005202 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02076 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3981848 Mimi Mimi16g02076 Mimi-Chr16:82822049 Mimi16g02302 Mimi-Chr16:87505286
4008942 Mimi Mimi16g02076 Mimi-Chr16:82822049 Mimi17g00708 Mimi-Chr17:37514268
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mimi19g00871 ACH 16 464 GRAS Transcription Factor family AT1G14920 56.639 0.0 522.0
Mimi18g00308 . 14 530 GRAS Transcription Factor family AT1G14920 63.148 0.0 675.0
Mimi18g00365 . 27 135 GRAS Transcription Factor family AT1G66350 41.593 1.02e-14 67.8
Mimi18g01232 ACH 476 713 GRAS Transcription Factor family AT2G37650 63.445 2.18e-103 327.0
Mimi18g01528 . 55 467 GRAS Transcription Factor family AT5G48150 64.833 0.0 540.0
Mimi18g01566 . 35 640 GRAS Transcription Factor family AT5G52510 44.038 2.44e-132 400.0
Mimi18g01860 . 37 484 GRAS Transcription Factor family AT4G36710 47.495 1.40e-127 380.0
Mimi18g01867 . 37 484 GRAS Transcription Factor family AT4G36710 47.289 1.30e-125 375.0
Mimi18g02180 . 165 529 GRAS Transcription Factor family AT1G14920 34.271 1.34e-68 229.0
Mimi17g00297 . 40 490 GRAS Transcription Factor family AT5G48150 58.672 0.0 548.0
Mimi17g00624 . 16 417 GRAS Transcription Factor family AT5G48150 50.591 2.46e-134 396.0
Mimi17g00708 . 353 547 GRAS Transcription Factor family AT3G03450 38.071 1.63e-33 125.0
Mimi17g00847 . 177 597 GRAS Transcription Factor family AT1G50600 65.566 0.0 575.0
Mimi17g02082 . 73 714 GRAS Transcription Factor family AT2G37650 53.485 0.0 650.0
Mimi16g00361 WGDA 86 767 GRAS Transcription Factor family AT1G07530 50.364 0.0 647.0
Mimi16g01289 . 46 135 GRAS Transcription Factor family AT1G66350 47.059 2.16e-18 84.0
Mimi16g02076 . 480 651 GRAS Transcription Factor family AT3G54220 88.953 1.77e-105 330.0
Mimi16g02302 . 274 650 GRAS Transcription Factor family AT3G54220 53.158 6.50e-141 418.0
Mimi16g02459 ACH,WGDA 20 766 GRAS Transcription Factor family AT1G07530 44.144 0.0 614.0
Mimi15g00848 . 1 584 GRAS Transcription Factor family AT5G66770 55.259 0.0 563.0
Mimi15g00962 . 12 409 GRAS Transcription Factor family AT3G49950 61.985 0.0 522.0
Mimi14g01851 . 27 94 GRAS Transcription Factor family AT1G66350 44.118 6.09e-08 47.4
Mimi13g00447 WGDA 278 547 GRAS Transcription Factor family AT3G03450 31.618 1.24e-36 139.0
Mimi13g00490 . 187 555 GRAS Transcription Factor family AT4G00150 46.475 2.28e-105 329.0
Mimi13g00577 . 494 654 GRAS Transcription Factor family AT1G63100 54.819 4.59e-44 162.0
Mimi13g01488 . 17 95 GRAS Transcription Factor family AT1G14920 55.696 6.62e-22 92.8
Mimi13g01814 . 55 467 GRAS Transcription Factor family AT5G48150 64.115 0.0 538.0
Mimi12g02387 . 137 515 GRAS Transcription Factor family AT5G17490 34.074 1.09e-54 189.0
Mimi11g00551 ACH 37 484 GRAS Transcription Factor family AT4G36710 47.93 5.37e-127 377.0
Mimi11g01189 . 155 516 GRAS Transcription Factor family AT5G17490 35.77 8.36e-67 224.0
Mimi11g01536 ACH 9 510 GRAS Transcription Factor family AT3G13840 47.909 9.08e-152 442.0
Mimi11g01540 . 9 510 GRAS Transcription Factor family AT3G13840 47.719 1.39e-151 442.0
Mimi10g00624 . 1 525 GRAS Transcription Factor family AT4G17230 52.424 0.0 541.0
Mimi10g01476 . 36 405 GRAS Transcription Factor family AT5G41920 67.819 1.02e-176 499.0
Mimi9g00876 . 86 767 GRAS Transcription Factor family AT1G07530 47.757 0.0 603.0
Mimi9g01308 . 376 489 GRAS Transcription Factor family AT5G48150 64.035 1.44e-48 167.0
Mimi8g00197 . 40 444 GRAS Transcription Factor family AT1G55580 48.786 1.51e-119 355.0
Mimi8g00376 . 59 489 GRAS Transcription Factor family AT5G48150 69.318 0.0 625.0
Mimi8g00996 . 92 555 GRAS Transcription Factor family AT4G00150 39.506 9.24e-101 315.0
Mimi8g01016 WGDA 178 547 GRAS Transcription Factor family AT3G03450 26.702 9.11e-43 158.0
Mimi8g01202 . 120 243 GRAS Transcription Factor family AT4G36710 45.161 4.68e-26 99.8
Mimi7g00636 . 4 482 GRAS Transcription Factor family AT1G50420 59.29 0.0 580.0
Mimi6g00703 ACH,WGDA 37 486 GRAS Transcription Factor family AT4G36710 48.465 2.01e-138 406.0
Mimi6g01043 . 449 640 GRAS Transcription Factor family AT5G52510 53.846 8.58e-69 230.0
Mimi6g01062 . 513 640 GRAS Transcription Factor family AT5G52510 52.672 1.62e-43 160.0
Mimi6g01842 ACH 86 767 GRAS Transcription Factor family AT1G07530 45.64 0.0 564.0
Mimi5g01182 ACH 316 767 GRAS Transcription Factor family AT1G07530 50.0 1.29e-163 484.0
Mimi5g01183 . 20 766 GRAS Transcription Factor family AT1G07530 47.513 0.0 603.0
Mimi5g01544 . 31 107 GRAS Transcription Factor family AT1G66350 66.667 5.49e-21 95.9
Mimi5g01672 . 27 135 GRAS Transcription Factor family AT1G66350 48.551 1.65e-27 105.0
Mimi5g01712 ACH 258 544 GRAS Transcription Factor family AT3G03450 27.333 3.40e-23 100.0
Mimi5g01713 . 258 544 GRAS Transcription Factor family AT3G03450 27.575 3.53e-20 90.5
Mimi4g00059 . 117 530 GRAS Transcription Factor family AT4G37650 51.972 1.47e-140 410.0
Mimi4g00423 . 122 530 GRAS Transcription Factor family AT4G37650 52.607 5.90e-141 411.0
Mimi3g00364 ACH 9 510 GRAS Transcription Factor family AT3G13840 46.035 3.21e-145 425.0
Mimi3g00894 . 150 506 GRAS Transcription Factor family AT1G66350 30.423 3.62e-54 193.0
Mimi3g00895 . 178 547 GRAS Transcription Factor family AT3G03450 30.57 9.64e-57 196.0
Mimi3g01719 . 147 408 GRAS Transcription Factor family AT1G66350 44.485 5.56e-68 228.0
Mimi2g00189 . 35 582 GRAS Transcription Factor family AT2G01570 62.345 0.0 667.0
Mimi2g00190 ACH 288 530 GRAS Transcription Factor family AT1G14920 62.963 7.20e-104 308.0
Mimi2g01011 . 1 525 GRAS Transcription Factor family AT4G17230 45.238 5.47e-152 441.0
Mimi2g01361 . 43 530 GRAS Transcription Factor family AT4G37650 59.802 0.0 550.0
Mimi1g00378 . 4 482 GRAS Transcription Factor family AT1G50420 63.048 0.0 607.0
Mimi1g00556 . 50 407 GRAS Transcription Factor family AT3G49950 47.027 2.23e-110 327.0
Mimi1g00610 . 50 407 GRAS Transcription Factor family AT3G49950 46.757 9.15e-110 326.0
Mimi1g00725 . 158 546 GRAS Transcription Factor family AT3G03450 24.814 1.12e-27 114.0
Mimi1g00762 . 152 517 GRAS Transcription Factor family AT5G17490 24.227 9.46e-24 102.0
Mimi1g01648 . 23 529 GRAS Transcription Factor family AT1G14920 60.192 0.0 607.0
Mimi1g02181 . 23 529 GRAS Transcription Factor family AT1G14920 62.595 0.0 648.0
Mimi1g02402 ACH,WGDA 26 486 GRAS Transcription Factor family AT4G36710 47.228 3.86e-127 378.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Mimi GRAS 1.2e-49 CL0063 TF GRAS