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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00063 ATGAAAATGGTGAGAAAAAGGACAGCTTCCGATATGGAGCTCCAACCAGATACCGGAAACTACCACCACCACCACAGGATGTTACGTAGACCACCCGGGTCGAATCCACTCGACATTGCGGGTATCCACGGGTTATTATCTTCTACATCAACAGATACTTCTCATAATAATCTTGCTAATGTGGATGTTACTGGTATTGGTAGTGGTACTGGTATTATAAGTACTAGTATTAACCACCCACCTAACTACTCCACTATGACGCTGCCGTCATCATCGTCTACAAACACGGCGAATCTGATGTCATCATCCACGGCAACAAACTACTTAACTAACAAAAACACTTCTCCTCCGTTATGTGTCTTTTCCGGCCTCCCCATGTTTCCACCTGACAAGAGTTATAACAGCAACAGCAGCAACACCGTCAATTCTAACACCGGTATGAGCTTCTTAACCGGTGGTGGTAACGGTAACGGTAATGGTAACGGTAACGGCATCGTCATGCCGAATGATGACTCCATGACGGCGACGGTGTGGGTAGATAACATCATAAAAGACTTGATTAACAGTTCAAGTGACGTGTCCATACCTCATCTTATTCATAACGTTAGAGAAATCATTCACCCGTGTAACCCTAATTTGGCCACTTTACTCGAATACAGGCTTCGTTCGTTAACAGATCCACCGAGTTTGGTAGACCAGCAGCCTGTTAATAATGATAGTTTTCAACCTAGGGTTCCGGTGAGAGGAAAACAGACGCAAACGACGTCGTTTCCACTTCCTCCAGCTGATTTACATTGTCAGTTAGATTGGACCGGTGAGGGCTTCAACGCCGGTGAAGCTACTCCTGAAACTATTATTACATCCATCAATCAACAACAGCAGCAGCAACAGCAACAACAACGAGAAGAAAATGAATCTCCACCGTCACAACCACCGCCAGCAACAGATCAAAACACACAAGCGGCGGCAATGGCGTTACGAGAGAAGAAACGAGAGGAGCTTCGACAGCAGAAACGAGATGAAGAAGGTTTACATCTTCTTACTTTGCTGTTACAATGTGCTGAAGCGGTTGCAGCTGACAACTTTGAAGAAGCAAATAAGATGCTACTCGAAATCTCCGAGCTGTCAACGCCGTACGGCACCGCAGCACAGCGCGTTGCAGCATACTTCTCCGAAGCAATGTCTGCCAGACTGATGAGTTCATGTCTAGGAATATACACAACACTCCCTCCGAATGTTGCGGTTTCTCAAACCCTAAAAAAGATGACGTCAGCTTTCCAAGTGTTCAATGGTATCAGTCCGTTTGTTAAGTTCTCGCATTTTACGGCGAATCAAGCGATACAGGAAGCGTTCGAGAGGGAAGATAGGGTGCACATTATTGATTTGGATATCATGCAAGGGTTGCAGTGGCCTGGGCTTTTTCATATTTTGGCGTCCAGGCCCGGTGGGCCGCCGTTTGTGCGGCTCACCGGATTGGGGAACTCGTTGGATGCGCTCGAGGCGACTGGAAAACGGTTGTCGGATTTTGCGGATAAGTTGGGACTTCCGTTTGAGTTCTCGGCTGTCGCGGAGAAAGTTGGGAATTTGAACCCGGAGAGATTGAAGGTGAGCAAGAGGGAAGCGGTTGCGGTTCATTGGTTACAGCATTCGTTGTATGATGTCACTGGATCCGACACCAATACGTTATGGTTTCTTCAGAGATTGGCTCCAAAAGTCGTGACGGTGGTCGAGCAGGATCTGAGCCATGCGGGTTCGTTTCTGGGAAGATTTGTAGAGGCTATACACTACTACTCAGCATTGTTCGACTCGTTGGGGTCAAGCTATGGGGAAGAGAGTGAAGAAAGGCATGTGGTGGAACAACAGTTGCTGTCGAAGGAGATTAGGAACGTGTTGGCGATAGGGGGCCCGTCGAGGAGTGGGGAGGTGAAGTTTAATAATTGGAGGGAGAAGCTGGAACAATGTGGGTTCAAGGGTATATCTTTAGCTGGAAATGCTGCAGCCCAAGCAACACTTTTGTTAGGGATGTTTCCGTCAAATGGCTACACGCTGGTAGAGGACAAGGGCACGCTTAAGCTTGGATGGAAAGACCTTTGTTTGCTTACTGCCTCTGCATGGAGACCTTAG 2124 47.5 MKMVRKRTASDMELQPDTGNYHHHHRMLRRPPGSNPLDIAGIHGLLSSTSTDTSHNNLANVDVTGIGSGTGIISTSINHPPNYSTMTLPSSSSTNTANLMSSSTATNYLTNKNTSPPLCVFSGLPMFPPDKSYNSNSSNTVNSNTGMSFLTGGGNGNGNGNGNGIVMPNDDSMTATVWVDNIIKDLINSSSDVSIPHLIHNVREIIHPCNPNLATLLEYRLRSLTDPPSLVDQQPVNNDSFQPRVPVRGKQTQTTSFPLPPADLHCQLDWTGEGFNAGEATPETIITSINQQQQQQQQQQREENESPPSQPPPATDQNTQAAAMALREKKREELRQQKRDEEGLHLLTLLLQCAEAVAADNFEEANKMLLEISELSTPYGTAAQRVAAYFSEAMSARLMSSCLGIYTTLPPNVAVSQTLKKMTSAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGNSLDALEATGKRLSDFADKLGLPFEFSAVAEKVGNLNPERLKVSKREAVAVHWLQHSLYDVTGSDTNTLWFLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSKEIRNVLAIGGPSRSGEVKFNNWREKLEQCGFKGISLAGNAAAQATLLLGMFPSNGYTLVEDKGTLKLGWKDLCLLTASAWRP 707
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00063 707 MobiDBLite consensus disorder prediction 228 260 - -
Hean1g00063 707 MobiDBLite consensus disorder prediction 1 22 - -
Hean1g00063 707 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 306 705 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009630(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0051457(PANTHER)|GO:0090610(PANTHER)
Hean1g00063 707 MobiDBLite consensus disorder prediction 289 305 - -
Hean1g00063 707 MobiDBLite consensus disorder prediction 289 322 - -
Hean1g00063 707 Pfam GRAS domain family 347 706 IPR005202 -
Hean1g00063 707 MobiDBLite consensus disorder prediction 1 28 - -
Hean1g00063 707 ProSiteProfiles GRAS family profile. 337 706 IPR005202 -
Hean1g00063 707 MobiDBLite consensus disorder prediction 228 261 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00063 K27742 protein SCARECROW
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3228964 Hean Hean1g00063 Hean-Chr1:1725114 Hean9g02206 Hean-Chr9:121642161
3263393 Hean Hean12g03468 Hean-Chr12:153048289 Hean1g00063 Hean-Chr1:1725114
3269941 Hean Hean1g01810 Hean-Chr1:86671853 Hean1g00063 Hean-Chr1:1725114
3280486 Hean Hean1g00063 Hean-Chr1:1725114 Hean11g02585 Hean-Chr11:114988921
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g03028 . 1 525 GRAS Transcription Factor family AT4G17230 52.888 0.0 548.0
Hean17g04139 . 11 530 GRAS Transcription Factor family AT1G14920 62.321 0.0 671.0
Hean16g00020 . 165 529 GRAS Transcription Factor family AT1G14920 34.286 5.74e-68 227.0
Hean16g01661 ACH 117 516 GRAS Transcription Factor family AT5G17490 24.122 1.38e-19 90.1
Hean16g02672 . 1 525 GRAS Transcription Factor family AT4G17230 52.338 0.0 538.0
Hean16g04455 . 1 584 GRAS Transcription Factor family AT5G66770 54.545 0.0 537.0
Hean15g00037 ACH,WGDA 152 521 GRAS Transcription Factor family AT5G17490 23.291 2.86e-18 85.1
Hean15g01029 ACH 1 530 GRAS Transcription Factor family AT4G37650 55.249 0.0 543.0
Hean15g02941 . 32 399 GRAS Transcription Factor family AT5G41920 34.949 5.90e-56 189.0
Hean15g03307 . 141 505 GRAS Transcription Factor family AT1G66350 44.737 5.29e-99 312.0
Hean15g04031 . 119 489 GRAS Transcription Factor family AT5G48150 64.151 9.18e-175 499.0
Hean14g00111 . 226 767 GRAS Transcription Factor family AT1G07530 47.706 7.43e-168 501.0
Hean14g00506 . 2 407 GRAS Transcription Factor family AT3G49950 44.366 2.37e-118 350.0
Hean14g00727 . 4 482 GRAS Transcription Factor family AT1G50420 62.733 0.0 598.0
Hean14g01821 ACH,WGDA 37 486 GRAS Transcription Factor family AT4G36710 47.983 1.47e-134 397.0
Hean14g02244 . 37 581 GRAS Transcription Factor family AT2G01570 60.105 0.0 655.0
Hean14g02569 ACH 1 530 GRAS Transcription Factor family AT4G37650 50.832 1.11e-169 488.0
Hean14g03857 . 86 766 GRAS Transcription Factor family AT1G07530 45.429 0.0 567.0
Hean14g04321 WGDA 180 640 GRAS Transcription Factor family AT5G52510 43.949 3.84e-113 348.0
Hean13g00842 . 30 640 GRAS Transcription Factor family AT5G52510 43.096 1.06e-131 399.0
Hean13g01074 WGDA 205 555 GRAS Transcription Factor family AT4G00150 47.123 1.58e-103 325.0
Hean13g01147 WGDA 170 547 GRAS Transcription Factor family AT3G03450 27.249 2.15e-50 179.0
Hean13g01148 WGDA 170 547 GRAS Transcription Factor family AT3G03450 28.278 2.08e-52 185.0
Hean13g01150 WGDA 170 547 GRAS Transcription Factor family AT3G03450 28.68 3.93e-51 179.0
Hean13g01151 WGDA 170 547 GRAS Transcription Factor family AT3G03450 27.877 1.28e-50 181.0
Hean13g01153 . 140 546 GRAS Transcription Factor family AT3G03450 27.626 2.13e-51 182.0
Hean13g01154 . 152 547 GRAS Transcription Factor family AT3G03450 29.078 4.01e-52 185.0
Hean13g02527 . 40 444 GRAS Transcription Factor family AT1G55580 46.209 1.12e-120 358.0
Hean13g03689 WGDA 141 530 GRAS Transcription Factor family AT4G37650 52.97 3.66e-141 412.0
Hean13g03849 . 301 343 GRAS Transcription Factor family AT1G07520 53.333 1.13e-06 42.0
Hean12g00289 . 19 80 GRAS Transcription Factor family AT1G14920 58.065 6.78e-16 69.3
Hean12g00712 ACH,WGDA 9 510 GRAS Transcription Factor family AT3G13840 44.038 3.21e-137 405.0
Hean12g00715 . 9 510 GRAS Transcription Factor family AT3G13840 44.038 3.21e-137 405.0
Hean12g01142 . 26 582 GRAS Transcription Factor family AT2G01570 62.129 0.0 689.0
Hean12g02712 . 12 409 GRAS Transcription Factor family AT3G49950 61.111 0.0 521.0
Hean12g03468 . 35 405 GRAS Transcription Factor family AT5G41920 65.625 8.57e-173 489.0
Hean11g00339 . 363 520 GRAS Transcription Factor family AT5G17490 38.037 2.01e-22 91.3
Hean11g00428 . 37 482 GRAS Transcription Factor family AT4G36710 48.268 1.22e-127 378.0
Hean11g00638 . 34 490 GRAS Transcription Factor family AT5G48150 60.129 0.0 557.0
Hean11g01137 . 115 489 GRAS Transcription Factor family AT5G48150 64.0 1.21e-174 499.0
Hean11g01249 . 155 597 GRAS Transcription Factor family AT1G50600 63.901 0.0 577.0
Hean11g01539 . 171 545 GRAS Transcription Factor family AT3G03450 33.081 1.64e-64 217.0
Hean11g02227 . 86 767 GRAS Transcription Factor family AT1G07530 48.551 0.0 622.0
Hean11g02585 . 243 651 GRAS Transcription Factor family AT3G54220 80.488 0.0 657.0
Hean10g00949 ACH,WGDA 99 515 GRAS Transcription Factor family AT5G17490 23.23 1.44e-19 89.7
Hean10g01000 . 171 545 GRAS Transcription Factor family AT3G03450 26.753 4.77e-26 109.0
Hean10g02929 . 227 507 GRAS Transcription Factor family AT1G66350 33.681 4.65e-51 182.0
Hean10g02930 . 227 506 GRAS Transcription Factor family AT1G66350 32.753 1.27e-50 172.0
Hean10g03416 ACH,WGDA 1 510 GRAS Transcription Factor family AT3G13840 45.992 6.06e-144 422.0
Hean10g03828 . 27 529 GRAS Transcription Factor family AT1G14920 49.225 1.29e-165 478.0
Hean9g02007 . 178 544 GRAS Transcription Factor family AT3G03450 33.166 5.04e-52 184.0
Hean9g02206 . 29 507 GRAS Transcription Factor family AT1G66350 38.6 4.17e-100 315.0
Hean9g02727 ACH 29 484 GRAS Transcription Factor family AT4G36710 46.581 3.83e-123 366.0
Hean9g03254 . 24 478 GRAS Transcription Factor family AT1G50420 36.681 1.18e-101 309.0
Hean9g04275 . 165 529 GRAS Transcription Factor family AT1G14920 35.55 9.62e-71 234.0
Hean9g04790 ACH 2 510 GRAS Transcription Factor family AT3G13840 46.97 1.19e-146 429.0
Hean8g00458 . 44 581 GRAS Transcription Factor family AT2G01570 57.07 0.0 619.0
Hean8g01376 . 86 766 GRAS Transcription Factor family AT1G07530 47.33 0.0 564.0
Hean8g01390 . 76 714 GRAS Transcription Factor family AT2G37650 45.205 4.42e-175 514.0
Hean8g01391 . 74 714 GRAS Transcription Factor family AT2G37650 42.683 2.13e-160 474.0
Hean8g01392 . 74 714 GRAS Transcription Factor family AT2G37650 44.31 4.42e-172 506.0
Hean8g02374 . 187 311 GRAS Transcription Factor family AT4G00150 58.015 8.33e-38 139.0
Hean8g02811 . 13 444 GRAS Transcription Factor family AT1G55580 48.307 2.28e-122 362.0
Hean8g03053 . 43 490 GRAS Transcription Factor family AT5G48150 69.42 0.0 634.0
Hean8g03203 . 160 224 GRAS Transcription Factor family AT5G41920 73.846 8.08e-30 108.0
Hean8g03665 . 223 767 GRAS Transcription Factor family AT1G07530 50.604 0.0 551.0
Hean8g03667 . 300 764 GRAS Transcription Factor family AT1G07530 50.424 1.18e-165 489.0
Hean8g03670 . 308 767 GRAS Transcription Factor family AT1G07530 51.304 2.97e-164 486.0
Hean7g00234 . 288 654 GRAS Transcription Factor family AT1G63100 64.054 1.63e-170 489.0
Hean7g01399 WGDA 25 486 GRAS Transcription Factor family AT4G36710 48.847 2.43e-141 415.0
Hean7g02709 . 86 767 GRAS Transcription Factor family AT1G07530 44.298 0.0 546.0
Hean7g03229 WGDA 166 639 GRAS Transcription Factor family AT5G52510 40.152 5.21e-107 333.0
Hean6g00610 ACH,WGDA 110 555 GRAS Transcription Factor family AT4G00150 49.793 3.15e-146 427.0
Hean6g01992 . 20 766 GRAS Transcription Factor family AT1G07530 46.386 0.0 603.0
Hean6g02939 . 4 482 GRAS Transcription Factor family AT1G50420 61.411 0.0 595.0
Hean5g01344 . 53 413 GRAS Transcription Factor family AT2G04890 32.115 8.55e-55 186.0
Hean5g01345 . 154 523 GRAS Transcription Factor family AT5G17490 34.0 3.68e-51 179.0
Hean5g01660 . 352 452 GRAS Transcription Factor family AT1G14920 51.163 9.82e-33 118.0
Hean5g02806 . 352 490 GRAS Transcription Factor family AT5G48150 82.014 3.20e-83 251.0
Hean5g02807 . 51 490 GRAS Transcription Factor family AT5G48150 67.562 0.0 609.0
Hean5g02976 . 161 529 GRAS Transcription Factor family AT1G14920 34.596 1.12e-69 231.0
Hean5g03500 . 1 445 GRAS Transcription Factor family AT1G55580 44.196 3.08e-102 308.0
Hean5g03502 . 1 445 GRAS Transcription Factor family AT1G55580 46.102 8.47e-112 333.0
Hean5g03503 . 23 444 GRAS Transcription Factor family AT1G55580 44.676 2.86e-101 307.0
Hean4g01581 . 123 593 GRAS Transcription Factor family AT1G21450 60.465 0.0 568.0
Hean4g03976 ACH,WGDA 84 555 GRAS Transcription Factor family AT4G00150 49.545 3.97e-157 462.0
Hean4g04247 . 73 714 GRAS Transcription Factor family AT2G37650 52.395 0.0 653.0
Hean4g04361 . 36 490 GRAS Transcription Factor family AT5G48150 56.087 3.17e-176 500.0
Hean3g02691 . 40 444 GRAS Transcription Factor family AT1G55580 48.276 6.57e-120 354.0
Hean3g03929 WGDA 139 530 GRAS Transcription Factor family AT4G37650 52.736 8.02e-139 405.0
Hean3g04297 ACH 167 555 GRAS Transcription Factor family AT4G00150 51.121 5.98e-138 414.0
Hean2g01154 . 462 613 GRAS Transcription Factor family AT1G63100 54.248 4.42e-52 174.0
Hean2g01504 . 149 593 GRAS Transcription Factor family AT1G21450 57.848 0.0 522.0
Hean2g02206 . 332 479 GRAS Transcription Factor family AT3G03450 35.762 7.47e-25 97.4
Hean2g02246 WGDA 205 555 GRAS Transcription Factor family AT4G00150 47.139 3.57e-101 317.0
Hean2g02332 . 170 546 GRAS Transcription Factor family AT3G03450 29.412 1.68e-52 185.0
Hean2g02333 WGDA 48 531 GRAS Transcription Factor family AT1G14920 25.912 1.01e-52 185.0
Hean2g02334 WGDA 170 547 GRAS Transcription Factor family AT3G03450 29.262 6.65e-51 181.0
Hean2g02335 . 334 582 GRAS Transcription Factor family AT2G01570 29.961 8.11e-36 132.0
Hean2g02337 WGDA 168 547 GRAS Transcription Factor family AT3G03450 27.949 7.75e-53 186.0
Hean2g02338 WGDA 84 531 GRAS Transcription Factor family AT1G14920 25.979 2.09e-54 189.0
Hean2g02343 WGDA 170 547 GRAS Transcription Factor family AT3G03450 28.205 4.55e-52 184.0
Hean1g00063 . 20 400 GRAS Transcription Factor family AT5G41920 55.928 3.02e-141 418.0
Hean1g00875 . 14 713 GRAS Transcription Factor family AT2G37650 49.008 0.0 634.0
Hean1g01094 . 339 380 GRAS Transcription Factor family AT2G37650 54.762 5.68e-07 43.1
Hean1g01314 . 15 767 GRAS Transcription Factor family AT1G07530 46.641 0.0 640.0
Hean1g01780 . 134 547 GRAS Transcription Factor family AT3G03450 27.273 5.08e-52 182.0
Hean1g01810 . 276 650 GRAS Transcription Factor family AT3G54220 53.175 4.89e-140 416.0
Hean1g02040 . 91 482 GRAS Transcription Factor family AT1G50420 62.245 5.75e-173 489.0
Hean1g02041 . 4 482 GRAS Transcription Factor family AT1G50420 60.625 0.0 567.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean GRAS 2e-126 CL0063 TF GRAS