AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00062 ATGCAAAGCAAAGCAATGGCATTAAAGAATAAAGTGCAAAGTATTGTTGTGACTACTATGTGGAGAAAGAATGCATTTCTGGTGTCTTCATCAAGAACTTTTGCAACCGGTTATGACGATAATCGAATCTTGAAGTCGCCTTCTTCGCTTGTTTCTCTTGACTTCCCTGATGTCTGGAATTATTCTAGCTCTACCAATTGTACTGAATCGTCTACTCACAAACTCGCTAGCGATCATACCGCTAGAGTAATCGATGGAAAACAAGTTTCCGAGGAAATCATATCAAACGTAGCAACGGAAGTAACAAGAATGAAGAAAACAATTGGTGAGGTTCCAGGACTCGGTGTAATTTTAGTAGGTGAGAGAAAAGATTCCCTAACATACGTTCGTAACAAGATAACTGCATGTGAAGAAGCCGGAATCAAGTTCAAACTGGCCGAATTCTCCGACAATTGTACCGAAGATGAAGTTTGTGATGCTATAATGCGGTTTAACGCAGATCCATCTTTTCATGGTATCCTTGTCCAGCTTCCTCTTCCTCAGCATCTAAACGAAGAGAAGATTCTGAATGTAGTGAAATTGGAAAAAGATGTAGACGGTTTTCATCCCGTGAATATGGGAAATCTAGCGATGAGGGGACGGGAACCGTTGTTCGTCCCGTGCACTCCGAAAGGTTGTGTTGAGTTGTTAATCAGATACGGTGTGGAGATTATGGGTAAGAAAGCGGTTGTTATCGGAAGAAGCAACATTGTTGGTTTACCTGCATCCTTGTTGTTACAGCGGCACCATGCAACAGTTACCATTGTGACTGCATTAACGCCAAACCCTGAAGAAATCACACGTGATGCTGATATTTTGATAAGTGGCGTAGGAGTCCCTAATATGGTTCGTGGAAGCTGGGTGAAGCCTGGCGCCGTGGTGGTTGATGTTGGAACTTATCCAATTGAGGACAAGAGTTGTGAGCAAGGGTATCGGCTGATAGGAGATGTGTGCTATGAGGAAGCATCAAGGGTAGCTTCTTTGATCACCCCTGTTCCGGGAGGAGTGGGGCCCATGACGGTTGCAATGCTGCTGTACAACACTCTTGAATCCGCTACCCGTAAGTACAATTTTGTTTAA 1119 43.61 MQSKAMALKNKVQSIVVTTMWRKNAFLVSSSRTFATGYDDNRILKSPSSLVSLDFPDVWNYSSSTNCTESSTHKLASDHTARVIDGKQVSEEIISNVATEVTRMKKTIGEVPGLGVILVGERKDSLTYVRNKITACEEAGIKFKLAEFSDNCTEDEVCDAIMRFNADPSFHGILVQLPLPQHLNEEKILNVVKLEKDVDGFHPVNMGNLAMRGREPLFVPCTPKGCVELLIRYGVEIMGKKAVVIGRSNIVGLPASLLLQRHHATVTIVTALTPNPEEITRDADILISGVGVPNMVRGSWVKPGAVVVDVGTYPIEDKSCEQGYRLIGDVCYEEASRVASLITPVPGGVGPMTVAMLLYNTLESATRKYNFV 372
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00062 372 FunFam C-1-tetrahydrofolate synthase, cytoplasmic, putative 86 226 - -
Hean1g00062 372 Pfam Tetrahydrofolate dehydrogenase-cyclohydrolase, catalytic domain 84 199 IPR020630 GO:0004488(InterPro)
Hean1g00062 372 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 188 209 IPR000672 GO:0004488(InterPro)
Hean1g00062 372 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 235 255 IPR000672 GO:0004488(InterPro)
Hean1g00062 372 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 284 313 IPR000672 GO:0004488(InterPro)
Hean1g00062 372 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 153 180 IPR000672 GO:0004488(InterPro)
Hean1g00062 372 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 325 341 IPR000672 GO:0004488(InterPro)
Hean1g00062 372 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 112 134 IPR000672 GO:0004488(InterPro)
Hean1g00062 372 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 342 360 IPR000672 GO:0004488(InterPro)
Hean1g00062 372 FunFam Bifunctional protein FolD 218 345 - -
Hean1g00062 372 Gene3D Leucine Dehydrogenase, chain A, domain 1 86 363 - -
Hean1g00062 372 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 201 367 IPR036291 -
Hean1g00062 372 PANTHER C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED 80 370 - GO:0004477(PANTHER)|GO:0004488(PANTHER)|GO:0005829(PANTHER)|GO:0035999(PANTHER)
Hean1g00062 372 Pfam Tetrahydrofolate dehydrogenase-cyclohydrolase, NAD(P)-binding domain 202 368 IPR020631 GO:0004488(InterPro)
Hean1g00062 372 ProSitePatterns Tetrahydrofolate dehydrogenase-cyclohydrolase signature 2. 346 354 IPR020867 GO:0003824(InterPro)
Hean1g00062 372 Gene3D - 84 345 - -
Hean1g00062 372 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 81 200 IPR046346 -
Hean1g00062 372 Hamap Bifunctional protein FolD [folD]. 81 369 IPR000672 GO:0004488(InterPro)
Hean1g00062 372 CDD NAD-bind-m-THF-DH-Cyclohyd 195 365 IPR020631 GO:0004488(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00062 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3221014 Hean Hean15g02821 Hean-Chr15:93955634 Hean1g00062 Hean-Chr1:1698493
3228963 Hean Hean1g00062 Hean-Chr1:1698493 Hean4g03812 Hean-Chr4:192439730