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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04296 ATGGTGAGAAAGAGGGCAGCTTCCGATATGGAACTCCAAACCGGAGCCGGAGAGTACCACCACCGGCTGTTACGTCGACCACCGGCGGCGAATCCACTTGACATTGTCGGTTTTGGTGGTTTATCATCGTCGTCGCCGGCAAACGCTGGTCAGAATGATAACAACAATGTGAACAGTCTTGCCGCCGGTGCTGACCACCCACCCAACTACTCCACTATGACGCTACCGTCAGCATCATCGTCGGCACATCTGATGTCATTATCCACCACCACCTGCTCAACTAATTACATCGAGTCTCATTCTTCTGCAACCCTAAAAAACAATCCTCCTCCGTTATGTGTGTTTTCCGGTTTGCCTTTGTTTCCGCCGGACAAAAGTTATCATCATTTGTCGAATTTGAGTTCTGGTAACTCTACGGTCGCCGGAGTGGTACCGTCGAGTAATAATACTAGTAACACCGTCAATCTTAACGCCGGGATGGCGTTCCTGACCGCCGGTGGGAGTAACAGCACCGGCATGCCGGCAGATGACTCCATGTCCGCGACGGCATGGATTGATAGCATCATTAAAGATTTGATTCATAGTTCGACAGATGTTTCGATACCTCATCTGATTCACAACGTGAGAGAAATTATTCACCCGTGTAACCCTAATTTGGCCACCCTACTTGAATACAGGCTTCGATCATTGACGGATCCTCCGCCGGAGCTAGTAGACCAGCAATCTGTTCATAATCCGGCTGAAAGTTTCCGTTCTAGGGTTCCGGTGAGAGGAAAAGACGCACAAACGCAACAATTACGTAACAATCCGGCGATCGATGGTATGTTTCCACTTCCTCCGACGGATTTACAGCATCTGGATTGGACCGGTGATGATTACAACACCACCGGTGGGGCTCCTCCGACTGCAGTTCTTCCATCATCTAACAACGAGCAACAGCAACAGTTGCATGAATCTCCGCCACCTCAACCGCCGTCTACAACCGATCAAAACACAGCAACCGCATCAGCACAAGCGGCGGCAATGGCGTTACGAGAGAAGAAACGAGAAGAACTCCGGCAACAGAAACGAGACGAAGAAGGCCTTCACCTTCTCACACTTCTCCTCCAATGCGCAGAAGCAGTTTCCGACGACAATTTCGACGAAGCAAACAAAATGCTACTCGAAATCTCCGAGCTCTCAACGCCGTACGGCACCGCCGCACAGCGCGTCGCCGCCTACTTCTCGGAAGCCATGTCCGCCAGACTAACAACCTCTTATCTCGGAATCTACACCACACTTCCACCCAATGCCGCCGGTTCTCTCGGCCTGAAAAAGATAACGTCAGCTTTCCAAATCTTCAACGGCATCAGTCCGTTCGTCAAATTCTCACATTTCACTGCAAATCAAGCGATTCAAGAAGCATTCGAGCGTGAAGATAGGGTTCACATCATCGATCTCGACATCATGCAAGGTCTGCAATGGCCGGGTCTTTTTCACATTCTAGCATCCCGTCCCGGTGGTCCGCCGTTCGTCCGGCTAACCGGATTGGGTAACTCGTTGGACGCACTTGAGGCCACCGGAAAACGGTTGTCGGACTTTGCCGACAAACTCGGGCTTCCGTTTGAGTTTTCGGCGGTTGCTGATAAAGTTGGGAATTTGAATCCGGAGAGATTGAAGGTGAGCAAGAGGGAAGCTGTTGCAGTTCACTGGTTGCAGCATTCTTTATATGATGTTACCGGATCCGACACCAATACTTTATGGTTCCTCCAAAGATTGGCGCCAAAAGTGGTGACGGTGGTGGAACAGGATCTAAGCCATGCCGGGTCATTTTTGGGAAGATTTGTAGAGGCGATTCATTACTACTCAGCATTGTTTGACTCGTTGGGGTCAAGCTACGGGGAAGAGAGTGAAGAAAGACATGTGGTGGAACAACAATTGCTTTCAAAGGAGATAAGGAACGTGTTGTCGATAGGTGGACCGTCGAGGACCGGTGAAGTGAAGTTCAATAATTGGCGGGAAAAGTTGGAACAATGTGGGTTCAAGGGTATATCTTTAGCGGGAAATGCTGCAGCCCAAGCAACACTTTTGTTAGGGATGTTTCCTTCTAATGGTTACACTTTGGTGGAGGATAAAGGAACCCTCAAACTTGGATGGAAAGATCTTTGCTTGCTTACCGCATCTGCTTGGAGACCTTAG 2178 49.72 MVRKRAASDMELQTGAGEYHHRLLRRPPAANPLDIVGFGGLSSSSPANAGQNDNNNVNSLAAGADHPPNYSTMTLPSASSSAHLMSLSTTTCSTNYIESHSSATLKNNPPPLCVFSGLPLFPPDKSYHHLSNLSSGNSTVAGVVPSSNNTSNTVNLNAGMAFLTAGGSNSTGMPADDSMSATAWIDSIIKDLIHSSTDVSIPHLIHNVREIIHPCNPNLATLLEYRLRSLTDPPPELVDQQSVHNPAESFRSRVPVRGKDAQTQQLRNNPAIDGMFPLPPTDLQHLDWTGDDYNTTGGAPPTAVLPSSNNEQQQQLHESPPPQPPSTTDQNTATASAQAAAMALREKKREELRQQKRDEEGLHLLTLLLQCAEAVSDDNFDEANKMLLEISELSTPYGTAAQRVAAYFSEAMSARLTTSYLGIYTTLPPNAAGSLGLKKITSAFQIFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGNSLDALEATGKRLSDFADKLGLPFEFSAVADKVGNLNPERLKVSKREAVAVHWLQHSLYDVTGSDTNTLWFLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSKEIRNVLSIGGPSRTGEVKFNNWREKLEQCGFKGISLAGNAAAQATLLLGMFPSNGYTLVEDKGTLKLGWKDLCLLTASAWRP 725
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04296 725 MobiDBLite consensus disorder prediction 44 62 - -
Stre1g04296 725 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 341 723 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009630(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0051457(PANTHER)|GO:0090610(PANTHER)
Stre1g04296 725 MobiDBLite consensus disorder prediction 300 317 - -
Stre1g04296 725 Pfam GRAS domain family 365 724 IPR005202 -
Stre1g04296 725 MobiDBLite consensus disorder prediction 44 65 - -
Stre1g04296 725 MobiDBLite consensus disorder prediction 236 354 - -
Stre1g04296 725 ProSiteProfiles GRAS family profile. 355 724 IPR005202 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04296 K27742 protein SCARECROW
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5183196 Stre Stre10g01235 Stre-Chr10:31071087 Stre1g04296 Stre-Chr1:129058552
5190753 Stre Stre1g04296 Stre-Chr1:129058552 Stre7g00170 Stre-Chr7:5133809
5219301 Stre Stre1g04526 Stre-Chr1:133257235 Stre1g04296 Stre-Chr1:129058552
5227381 Stre Stre1g04296 Stre-Chr1:129058552 Stre11g02926 Stre-Chr11:113814960
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Stre9g01289 . 24 116 GRAS Transcription Factor family AT1G66350 52.041 5.33e-24 95.1
Stre9g03242 . 178 547 GRAS Transcription Factor family AT3G03450 26.632 3.60e-44 162.0
Stre9g03236 . 178 547 GRAS Transcription Factor family AT3G03450 29.167 6.27e-54 189.0
Stre9g03238 . 150 507 GRAS Transcription Factor family AT1G66350 30.343 6.85e-53 186.0
Stre9g01089 . 86 767 GRAS Transcription Factor family AT1G07530 48.637 0.0 612.0
Stre9g02813 . 60 489 GRAS Transcription Factor family AT5G48150 66.437 0.0 594.0
Stre9g03241 . 150 507 GRAS Transcription Factor family AT1G66350 30.079 1.70e-52 185.0
Stre9g01526 . 41 489 GRAS Transcription Factor family AT5G48150 53.648 6.23e-171 489.0
Stre9g03243 . 227 506 GRAS Transcription Factor family AT1G66350 29.021 2.31e-34 128.0
Stre1g01462 ACH,WGDA 37 486 GRAS Transcription Factor family AT4G36710 49.569 5.40e-134 396.0
Stre1g03210 . 121 593 GRAS Transcription Factor family AT1G21450 60.888 0.0 578.0
Stre1g04526 . 270 650 GRAS Transcription Factor family AT3G54220 50.392 2.39e-133 397.0
Stre1g01205 . 37 581 GRAS Transcription Factor family AT2G01570 62.1 0.0 670.0
Stre1g01542 ACH 146 530 GRAS Transcription Factor family AT4G37650 57.772 1.90e-152 443.0
Stre1g04835 . 86 767 GRAS Transcription Factor family AT1G07530 47.46 0.0 595.0
Stre1g03973 . 6 482 GRAS Transcription Factor family AT1G50420 60.797 0.0 581.0
Stre1g04296 . 250 651 GRAS Transcription Factor family AT3G54220 80.988 0.0 654.0
Stre1g02515 . 86 767 GRAS Transcription Factor family AT1G07530 49.565 0.0 632.0
Stre1g05109 . 14 717 GRAS Transcription Factor family AT2G37650 49.444 0.0 665.0
Stre1g03880 . 171 545 GRAS Transcription Factor family AT3G03450 24.156 5.59e-22 96.7
Stre10g03145 WGDA 170 547 GRAS Transcription Factor family AT3G03450 30.256 4.09e-56 196.0
Stre10g02177 . 205 555 GRAS Transcription Factor family AT4G00150 47.123 2.92e-104 326.0
Stre10g00120 . 87 555 GRAS Transcription Factor family AT4G00150 47.273 3.58e-151 447.0
Stre10g01235 . 165 547 GRAS Transcription Factor family AT3G03450 31.655 6.39e-49 174.0
Stre10g00124 ACH 87 555 GRAS Transcription Factor family AT4G00150 47.273 1.87e-151 448.0
Stre10g02043 . 34 654 GRAS Transcription Factor family AT1G63100 49.76 0.0 543.0
Stre11g00275 . 17 530 GRAS Transcription Factor family AT1G14920 51.04 9.94e-164 471.0
Stre11g02926 . 27 529 GRAS Transcription Factor family AT1G14920 48.851 8.71e-165 476.0
Stre11g01457 . 42 530 GRAS Transcription Factor family AT4G37650 59.332 0.0 551.0
Stre11g01404 ACH 42 530 GRAS Transcription Factor family AT4G37650 59.1 0.0 548.0
Stre11g02393 ACH 9 488 GRAS Transcription Factor family AT3G13840 44.689 3.21e-134 397.0
Stre4g02764 ACH 9 510 GRAS Transcription Factor family AT3G13840 44.615 3.15e-141 416.0
Stre4g02407 . 165 529 GRAS Transcription Factor family AT1G14920 35.325 3.32e-70 233.0
Stre4g01622 . 11 478 GRAS Transcription Factor family AT1G50420 36.152 5.12e-100 305.0
Stre4g00320 . 1 525 GRAS Transcription Factor family AT4G17230 50.987 0.0 528.0
Stre4g01869 ACH,WGDA 37 484 GRAS Transcription Factor family AT4G36710 47.495 1.17e-124 371.0
Stre4g00299 . 1 525 GRAS Transcription Factor family AT4G17230 51.526 0.0 533.0
Stre4g01284 . 144 507 GRAS Transcription Factor family AT1G66350 41.176 3.37e-87 280.0
Stre2g05063 . 154 516 GRAS Transcription Factor family AT5G17490 36.528 6.13e-69 229.0
Stre2g04021 . 20 444 GRAS Transcription Factor family AT1G55580 46.05 3.19e-112 336.0
Stre2g04452 . 297 649 GRAS Transcription Factor family AT3G54220 44.818 8.16e-99 315.0
Stre2g06188 . 161 529 GRAS Transcription Factor family AT1G14920 34.43 6.38e-69 229.0
Stre2g05094 . 154 516 GRAS Transcription Factor family AT5G17490 36.528 8.62e-69 229.0
Stre2g02173 . 12 409 GRAS Transcription Factor family AT3G49950 61.743 0.0 520.0
Stre2g04726 ACH,WGDA 37 486 GRAS Transcription Factor family AT4G36710 46.841 3.87e-126 374.0
Stre2g03070 . 24 116 GRAS Transcription Factor family AT1G66350 50.0 3.11e-23 92.8
Stre2g04388 . 30 405 GRAS Transcription Factor family AT5G41920 34.328 1.66e-52 181.0
Stre8g00110 ACH 168 544 GRAS Transcription Factor family AT3G03450 24.165 5.50e-18 84.3
Stre8g01794 . 35 640 GRAS Transcription Factor family AT5G52510 45.755 5.11e-138 415.0
Stre8g00111 ACH 116 515 GRAS Transcription Factor family AT5G17490 25.592 1.17e-23 102.0
Stre8g02902 . 14 529 GRAS Transcription Factor family AT1G14920 63.148 0.0 660.0
Stre8g02105 . 302 766 GRAS Transcription Factor family AT1G07530 47.639 1.10e-146 434.0
Stre8g00990 . 274 767 GRAS Transcription Factor family AT1G07530 48.081 6.77e-162 481.0
Stre8g00989 . 223 766 GRAS Transcription Factor family AT1G07530 53.403 0.0 574.0
Stre8g02093 . 54 714 GRAS Transcription Factor family AT2G37650 45.283 0.0 543.0
Stre8g02095 . 40 108 GRAS Transcription Factor family AT2G29060 45.946 2.16e-11 59.7
Stre8g01781 ACH 35 640 GRAS Transcription Factor family AT5G52510 45.912 4.90e-138 415.0
Stre3g03206 . 1 407 GRAS Transcription Factor family AT3G49950 43.839 1.17e-117 349.0
Stre3g02005 . 24 116 GRAS Transcription Factor family AT1G66350 51.02 1.03e-23 94.4
Stre3g01378 . 1 584 GRAS Transcription Factor family AT5G66770 54.758 0.0 560.0
Stre3g03174 . 4 482 GRAS Transcription Factor family AT1G50420 62.786 0.0 603.0
Stre3g00428 . 141 530 GRAS Transcription Factor family AT4G37650 53.234 7.65e-139 406.0
Stre5g02347 . 146 444 GRAS Transcription Factor family AT1G55580 53.074 2.28e-105 313.0
Stre5g01527 WGDA 211 582 GRAS Transcription Factor family AT2G01570 25.641 6.25e-38 144.0
Stre5g00347 . 14 530 GRAS Transcription Factor family AT1G14920 62.0 0.0 666.0
Stre5g01081 . 67 490 GRAS Transcription Factor family AT5G48150 69.213 0.0 617.0
Stre5g02346 . 146 444 GRAS Transcription Factor family AT1G55580 53.074 2.28e-105 313.0
Stre7g02319 ACH 32 639 GRAS Transcription Factor family AT5G52510 38.437 6.31e-116 357.0
Stre7g00687 . 177 544 GRAS Transcription Factor family AT3G03450 35.443 8.44e-59 201.0
Stre7g00185 . 36 405 GRAS Transcription Factor family AT5G41920 67.553 2.17e-176 498.0
Stre7g00170 . 36 405 GRAS Transcription Factor family AT5G41920 67.553 7.63e-176 496.0
Stre7g02584 . 53 693 GRAS Transcription Factor family AT2G29060 33.982 2.17e-98 313.0
Stre7g02065 ACH,WGDA 37 486 GRAS Transcription Factor family AT4G36710 48.246 3.05e-138 406.0
Stre6g00781 . 24 116 GRAS Transcription Factor family AT1G66350 50.0 2.64e-23 93.2
Stre6g00294 . 1 490 GRAS Transcription Factor family AT5G48150 57.371 0.0 550.0
Stre6g00711 . 147 506 GRAS Transcription Factor family AT1G66350 36.316 3.41e-63 213.0
Stre6g03204 ACH 185 555 GRAS Transcription Factor family AT4G00150 59.794 7.14e-151 446.0
Stre6g00877 . 155 597 GRAS Transcription Factor family AT1G50600 63.087 0.0 564.0
Stre6g01144 ACH 242 583 GRAS Transcription Factor family AT5G66770 26.629 7.37e-20 90.9
Stre6g00583 . 16 489 GRAS Transcription Factor family AT5G48150 50.402 4.36e-168 483.0
Stre6g00780 . 24 116 GRAS Transcription Factor family AT1G66350 51.02 1.53e-24 96.7
Stre6g02037 . 73 718 GRAS Transcription Factor family AT2G37650 51.187 0.0 644.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Stre GRAS 8.9e-125 CL0063 TF GRAS