AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04299 ATGGCGCTCAAAGATCATAAGTTCCTAACCTGCTACTTCGTTTTCATCGTCTTGACTATCCACACGACGACTAAACTCGTTTCCGCCGATGCGATCCAAGGTTGCGGTGGTTTTGTCGAGGCGAGCTCATCTTTGATCAAATCAAGGAAGCCAACTGATGCAAAATTGGATTATTCGCATATCACGGTAGAGCTGCGTACTTTGGATGGATTGGTAAAGGATCGAACACAATGTGCTCCTAATGGTTACTACTTCATCCCTGTGTATGACAAGGGTTCTTTTGTCATTAAAATTAAAGGACCAGAAGGATGGTCATGGGACCCAAATCAGGTTCCCGTGCTTGTCGATCATACCGGCTGTAATGGAAATGAAGATATAAATTTTCGGTTTACAGGGTTTAGTATTAGTGGAAAAGTTGTGGGAGCAGTTGGCGGTGCAAGTTGTAAATCTACTGATGGTGGTCCATCAAATGTAAAAGTTGAGCTTTTGAATTCTGATGGAAATGTTGTATCTTCTGTTTTCACATCAGCATCTGGAAGTTACTCTTTCACCAATATTAATCCAGGACGATATAACCTACGGGTATCTCATGATGACTTGAATATTGAAGTTAAAGGTTCAACAGAGGTTGAATTGGGATTTGGAAATAGCCAAGTTGATGATGTCTTTTTTGTCTCCGGTTATGATATTCGTGGATCGGTAGTTGCACAGGGAAACCCTATTTTGGGGGTTCACTTTTATCTGTACTCTGATGATGTTAAAGAAGTGTACTGCCCACAGGGTTCTGGTAACCCATCTGGAGATAAAACGGCTCTTTGTCATGCAATATCTGATGTTGATGAAAATTTAAATTTAAGTGTTTATAAACTTATACCTTACTATAAGGGTGAGAATACAGTTTTTGATGTTTCACCTCCCTCTGCAACTGTAACTGTAAAACATGATCATGCAACCGTATCTGAAAAGTTTCAGGTTACTGGATTTTCTGTTGGGGGACGTGTTGTTGATTCTGTTGGCAACGGAGTTGGTGGTGTAAAAATTGTGGTTGATGGTGTTGAGAGGTCCATCACTGATAAAGAAGGATATTATAAGCTCGATCAGGTTACATCTAAACAATATCTGATTGAAGCCAAAAAAGAGCACTACAAGTTTGACAAATTGGTTAACTTCATGGTTTTACCAAATATGGCATCAGTTGCTGATATCAAAGCAGTTTCATATAATGTTTGTGGGTCAGTGCAGACAGTTGATTCTGGTTACAAAGCAAAAGTGGCTCTGACTCATGGACCAGATAACGTTAAACCACAAAAGAAACAAACTGATGATAACGGCTATTTCTGCTTTGAGGTTCCACCTGGCGACTATCGGTTATCAGCTATTGCAGCCACACCTGAAACTACTCCGCATCTTTTATTTTCACCGCCACATATTGATGTCAATGTTAATGGTCCGTTGCTGTCACTGAAATTTTCTCAGGCACAAGTTAATGTTGGTGGCACAGTAACTTGCAAAGAAAAATGTGATTCATCTGTTTCTGTTGATCTTGTGAGATTGGATGCTAAAAGCAATGTAGAAAAGCAGACAGTTGGTTTGAATGACCAAAGTAATGAATTTTTATTTCAAAATGTCCTACCTGGAAAATATAAGCTTGAGGTCAAACACCTCTCTGAAGGAGTTAAATCTGGAGAAGATAAATGGTGTTGGGAAAAAAGCTCTGTACCTCTTAATGTTGGAACAGAAGATGTTAAAGGGATTAAATTTGTTCAGAAAGGTTATTGGGTTAACTTGGTTTCAACTCATGATGTAGATGCATATTTGCATCAATCAGATGGTACTCGTGTGGATCTGAAAATTAAGCACATTTGCATTGAATCTCCTGGAGTGCATGAACTTCACTTTGTCAACTCTTGTATACATTTTGGAGGCTCCTCTGTGAAAATTGACACCGCCAACACCTCGCCCATCTATCTGAAAGGAGAGAAGTATTTACTCGAAGGAGAAATTAAGGTTGAATTGACCTCACAATATGGTGTTGACCGGTTACCTAAAGGTCTAGTGGTTGACATTTTGAATGAAGAAGGAAAAGTTATTGATGGAACTACTGCAAAATTTGTTGGAAACGAAAATGAACAATCGCATACAGCTCTTTTCAAGTATAAAATATGGGCAAATCCTGGAGAAAAACTTACATTTGCACCTAAGGATATTAGCAATAATGAAAAGAAGATTTTATTTTATCCTAGACAACATCAGGTCAAAGTGTCACAAAATGGCTGTCAAGCATCAGTTCCTCCATTTTCCGCACGAATTGGGTTGTACATTGAAGGATCGGTTTCTCCCCCACTTCCAGATGTTTTTATTAAAATCTTTGCTTCTGGAGATAGTCAAAATGCTCAAATAAAGAAAAATGATTTGATTTATGAAACAACTTCAAGCATTGATGGCTCGTTTATTGGTGGACCCCTATATGATGACATCACTTACTATACCCAAGCTTCAAAGTCTAGTTATCATGTAAAGGAAATTGGACCGAATTCCTTTTCGTGTCAAAAACTTGGTCAAATTTCTGTGCGTATACATTCCAAAGAAGATGCCAATGAATTATTTCCGTCGGTTTTGTTATCATTAAGTGGCGAAGATGGTTATAGAAATAATTCAATATCTGCTGCTGGTGGAACTTTTGTATTTGATAATTTATTTCCTGGAAGCTTTTATCTCCGTCCTCTGTTGAAGGAGTATGCTTTCTCACCATCAGCACAAGCAGTTGAACTCGGGTCTGGGGAATCCACGGAAGTTGTTTTCCAAGCTACACGTGTCGCTTACAGTGCTATGGGTGCGGTTACTCTGTTATCTGGTCTACCAAAAGAAGGCGTTTCAGTTGAGGCCCGCTCTAATAAAGGTTATTATGAGGAAACTGTCACAGATTCACTAGGAAATTATCGCCTTCGAGGACTTCACCCCGATACAACTTACACAATTAAAATAGCAAAAATCAATGGAATTGGTGCCTCTAACATCGAACGGGCTTCACCAGAATCTGTTGAAGTCAAGGTTGGATATGAAGACATCAAGGGATTAGACTTTTTGGTTTTTGAGCAACCACAAACAACTTTATTAACCGGCGTTGTTCGAGGAAGCAGAATCAATGAGTTGTATGAACATCTACAATTGGAAGTTAGATCGGCTAGTGATCCATCTAATATTGAATCATTGTCGCCTTTGTCACTTTCATACTTCTTCCAGATAAAGGGTTTGCCAAGGGGTAAACATCTTCTGCTTCTTCGGTCTACCTTGACACCACGCACTCTCAGATTTGAATCCGAAGTCGTTGAGGTTGATTTGGAGACAAATACGCAAGCTCATGTGCGTTCTTTGACGTACAAAATTGAAGATGAACACCATAAACAGGAATTGACTCCAGCACCTGTGTATCCACTCATTATTGGAGTATCAGTGATTGCATTATTTATTAGCATGCCAAGATTAAAAGACATGTACCAAAGCAATGTTGGAGTACTGGTACCGGGACCCACTGCATCGACTAAAAAAGTCGTGAGAAGGAAGACTTACTAA 3573 39.24 MALKDHKFLTCYFVFIVLTIHTTTKLVSADAIQGCGGFVEASSSLIKSRKPTDAKLDYSHITVELRTLDGLVKDRTQCAPNGYYFIPVYDKGSFVIKIKGPEGWSWDPNQVPVLVDHTGCNGNEDINFRFTGFSISGKVVGAVGGASCKSTDGGPSNVKVELLNSDGNVVSSVFTSASGSYSFTNINPGRYNLRVSHDDLNIEVKGSTEVELGFGNSQVDDVFFVSGYDIRGSVVAQGNPILGVHFYLYSDDVKEVYCPQGSGNPSGDKTALCHAISDVDENLNLSVYKLIPYYKGENTVFDVSPPSATVTVKHDHATVSEKFQVTGFSVGGRVVDSVGNGVGGVKIVVDGVERSITDKEGYYKLDQVTSKQYLIEAKKEHYKFDKLVNFMVLPNMASVADIKAVSYNVCGSVQTVDSGYKAKVALTHGPDNVKPQKKQTDDNGYFCFEVPPGDYRLSAIAATPETTPHLLFSPPHIDVNVNGPLLSLKFSQAQVNVGGTVTCKEKCDSSVSVDLVRLDAKSNVEKQTVGLNDQSNEFLFQNVLPGKYKLEVKHLSEGVKSGEDKWCWEKSSVPLNVGTEDVKGIKFVQKGYWVNLVSTHDVDAYLHQSDGTRVDLKIKHICIESPGVHELHFVNSCIHFGGSSVKIDTANTSPIYLKGEKYLLEGEIKVELTSQYGVDRLPKGLVVDILNEEGKVIDGTTAKFVGNENEQSHTALFKYKIWANPGEKLTFAPKDISNNEKKILFYPRQHQVKVSQNGCQASVPPFSARIGLYIEGSVSPPLPDVFIKIFASGDSQNAQIKKNDLIYETTSSIDGSFIGGPLYDDITYYTQASKSSYHVKEIGPNSFSCQKLGQISVRIHSKEDANELFPSVLLSLSGEDGYRNNSISAAGGTFVFDNLFPGSFYLRPLLKEYAFSPSAQAVELGSGESTEVVFQATRVAYSAMGAVTLLSGLPKEGVSVEARSNKGYYEETVTDSLGNYRLRGLHPDTTYTIKIAKINGIGASNIERASPESVEVKVGYEDIKGLDFLVFEQPQTTLLTGVVRGSRINELYEHLQLEVRSASDPSNIESLSPLSLSYFFQIKGLPRGKHLLLLRSTLTPRTLRFESEVVEVDLETNTQAHVRSLTYKIEDEHHKQELTPAPVYPLIIGVSVIALFISMPRLKDMYQSNVGVLVPGPTASTKKVVRRKTY 1190
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04299 1190 Pfam BOS complex subunit NOMO1-like, beta sandwich domain 771 843 IPR055073 -
Stre1g04299 1190 PANTHER CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING 29 1168 IPR051417 GO:0005789(PANTHER)
Stre1g04299 1190 Pfam Carboxypeptidase regulatory-like domain 155 206 - -
Stre1g04299 1190 SUPERFAMILY Cna protein B-type domain 945 1003 - -
Stre1g04299 1190 Gene3D - 330 420 - -
Stre1g04299 1190 SUPERFAMILY Cna protein B-type domain 150 200 - -
Stre1g04299 1190 Pfam BOS complex subunit NOMO1-like, first beta sandwich domain 52 128 IPR055075 -
Stre1g04299 1190 Gene3D Immunoglobulins 146 256 IPR013783 -
Stre1g04299 1190 SUPERFAMILY Cna protein B-type domain 866 926 - -
Stre1g04299 1190 SUPERFAMILY Carboxypeptidase regulatory domain-like 329 423 IPR008969 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04299 K26500 BOS complex subunit NOMO