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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi20g01771 ATGGGATTAATGAGTAAAGTGCAAAGTGTTGTAGTGTCTGGGTGGAGGAAGAATGGCTTGTTGTTGTTGTCTTTATCAAGGAGTATAAGTACCTTTGCAGCCGGTTATGATAACCGGATTTTGAAGTCGCCTTCTCTTGTTTCCCTTGACTTCCCTGATGTATGGAGTTATTCTAGCTCTACCGGTTATAGTGAATCGTCAACCTACAAACTCGCTAGTGAACATACTGCTAGAGTGATCAATGGAAAACAAATTGCTGAGGAAATTATATCGAAGGTAGCCATTGAAGTAACAAGGATGAAGAAAACAATTGGTAAAGTTCCAGGACTGGGTGTGATTCTAGTAGGCGAGAGAAAAGATTCCCTAACATACGTTCGTAACAAGGTAAACGCATGTGAAGAAGCTGGAATCAAGTTCAAACTGACTAAATTTTTGGACAATTGTACCGAAGATGAAGTTTGTGATGCTATAATACGGTTTAACGCAGATCCATCTTTTCATGGTATCCTTGTCCAGCTTCCTCTTCCTCAGCATTTGAATGAAGAGAAGATTCTGGGTGTGTTGAAATTGGAAAAAGATGTAGATGGTTTTCATCCCATGAATATGGGAAATCTAGCTATGAGGGGAAGGGACCCGTTGTTTGTACCCTGCACTCCAAAAGGATGTGTTGAGTTGTTAATTAGATATGGAGTGGAGATTATGGGTAAGAAAGCGGTTGTTATTGGAAGAAGCAACATTGTTGGTTTACCCGCGTCCTTGCTGTTACAGAGGCACCATGCAACAGTTACCATTGTGACTGCATTAACATCAAACCCCGAAGAAATCACACGTGAAGCTGATATTTTGATAAGCGGGGTAGGAGTCCCTAATATGGTTCGTGGAAGCTGGGTGAAGCCTGGCGCCGTCGTGGTTGATGTTGGAACTTATCCAATTGAGGACACGAGCTGTGAGCTAGGGTATCGGCTGATAGGAGATGTGTGCTATGAGGAAGCATCTAAGGTAGCTTCTTTGATCACCCCTGTTCCGGGAGGAGTGGGGCCCATGACAGTTGCAATGCTGCTGTGCAACACTCTTGAATCCGCTACCCGTAAGTACAATTTTGTTTAA 1107 43.09 MGLMSKVQSVVVSGWRKNGLLLLSLSRSISTFAAGYDNRILKSPSLVSLDFPDVWSYSSSTGYSESSTYKLASEHTARVINGKQIAEEIISKVAIEVTRMKKTIGKVPGLGVILVGERKDSLTYVRNKVNACEEAGIKFKLTKFLDNCTEDEVCDAIIRFNADPSFHGILVQLPLPQHLNEEKILGVLKLEKDVDGFHPMNMGNLAMRGRDPLFVPCTPKGCVELLIRYGVEIMGKKAVVIGRSNIVGLPASLLLQRHHATVTIVTALTSNPEEITREADILISGVGVPNMVRGSWVKPGAVVVDVGTYPIEDTSCELGYRLIGDVCYEEASKVASLITPVPGGVGPMTVAMLLCNTLESATRKYNFV 368
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi20g01771 368 FunFam C-1-tetrahydrofolate synthase, cytoplasmic, putative 82 222 - -
Dapi20g01771 368 ProSitePatterns Tetrahydrofolate dehydrogenase-cyclohydrolase signature 2. 342 350 IPR020867 GO:0003824(InterPro)
Dapi20g01771 368 Pfam Tetrahydrofolate dehydrogenase-cyclohydrolase, catalytic domain 80 195 IPR020630 GO:0004488(InterPro)
Dapi20g01771 368 Pfam Tetrahydrofolate dehydrogenase-cyclohydrolase, NAD(P)-binding domain 198 364 IPR020631 GO:0004488(InterPro)
Dapi20g01771 368 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 197 363 IPR036291 -
Dapi20g01771 368 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 77 196 IPR046346 -
Dapi20g01771 368 Gene3D Leucine Dehydrogenase, chain A, domain 1 82 359 - -
Dapi20g01771 368 FunFam Bifunctional protein FolD 214 341 - -
Dapi20g01771 368 Gene3D - 80 341 - -
Dapi20g01771 368 Hamap Bifunctional protein FolD [folD]. 77 365 IPR000672 GO:0004488(InterPro)
Dapi20g01771 368 PANTHER C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED 76 366 - GO:0004477(PANTHER)|GO:0004488(PANTHER)|GO:0005829(PANTHER)|GO:0035999(PANTHER)
Dapi20g01771 368 CDD NAD-bind-m-THF-DH-Cyclohyd 191 361 IPR020631 GO:0004488(InterPro)
Dapi20g01771 368 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 184 205 IPR000672 GO:0004488(InterPro)
Dapi20g01771 368 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 108 130 IPR000672 GO:0004488(InterPro)
Dapi20g01771 368 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 149 176 IPR000672 GO:0004488(InterPro)
Dapi20g01771 368 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 280 309 IPR000672 GO:0004488(InterPro)
Dapi20g01771 368 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 338 356 IPR000672 GO:0004488(InterPro)
Dapi20g01771 368 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 231 251 IPR000672 GO:0004488(InterPro)
Dapi20g01771 368 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 321 337 IPR000672 GO:0004488(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi20g01771 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
260264 Dapi20g01771 Dapi4g01838
264867 Dapi4g01838 Dapi20g01771
385568 Dapi20g01771 Dapi4g01838
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1912617 Dapi Dapi20g01771 Dapi-Chr20:106488497 Dapi23g02606 Dapi-Chr23:115959569
2026276 Dapi Dapi20g01771 Dapi-Chr20:106488497 Dapi4g01838 Dapi-Chr4:115380353