AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fra18g01728 ATGACATTTAAGAGTAAAGTGCAAAGGATTGTAGTTTATGGTTGGAGAAAGAATGGCTTATTGTTGTCTTCCTCAAGGACTATAAATACCTTTGCAACTGGTTTGGATAATCGAATCTTGAAGTCACCTTCTCTTGTTTCTCTTGACCTCCCTGATGTGTGGGATTCTAGCTCTACCAATTATAGTGAATCATCTACCCAAAAATTTGCTAGTGAGCACACTGCTAGAGTAATTGATGGAAAACAAGTTGCCGAGGAAATCATATCAAAGGTAGCAACTGAAGTAACAAGAATGAAGAAAACAATTGGTGAGGTTCCGGGACTGGGTGTAATTTTAGTAGGCAAGAGAAAAGATTCCCTAACATATGTTCATAACAAGATAAAAGCTTGTGAAGAAGCAGGAATCAAGTTTAAACTGACCGAGTTTTCAGATAATTGTACCGAAGATGAAGTTTGTGATGCTATAATGCAGTTCAATGTAGATCCATCTTTTCATGGTATCCTTGTCCAGCTTCCTCTTCCTCAGCATCTAAATGAAGAGAAGATTTTGAATGTATTGAAATTGGAAAAAGATGTAGATGGTTTTCATCCAATGAATATGGGAAACCTAGCTATGAGGGGAAGGGAACCGTTGTTTATCCCCTGCACGCCAAAAGGTTGTGTCGAGTTATTAATCAGATATGGTGTGGATATTATGGGTAAGAAAGCTGTTGTTATTGGAAGAAGCAACATTGTTGGTTTACCCGCTTCCTTGTTGTTGCAGAGGCACCATGCAACAGTTACCATTGTGACAGCATTCACAGCAAACCCTGAAGAAATCACACGTGAAGCTGATATTTTGATAAGTGGCGTAGGAGTCCCTAATATGGTTCGTGGAAGCTGGGTGAAGCCTGGTGCTGTGGTGGTTGATGTTGGAACTCATCCGATTGAGGACTCAAGTTGTGAGCAAGGGTATCGGCTGATGGGAGATGTATGTTACGAGGAAGCATCAAGGGTAGCTTCTTTGATCACCCCTGTTCCGGGAGGAGTGGGGCCCATGACTGTTGCAATGCTGCTGTGCAATACGCTTGAATCTGCTACGCGTAAGTACAATTTTGTTTAA 1101 41.24 MTFKSKVQRIVVYGWRKNGLLLSSSRTINTFATGLDNRILKSPSLVSLDLPDVWDSSSTNYSESSTQKFASEHTARVIDGKQVAEEIISKVATEVTRMKKTIGEVPGLGVILVGKRKDSLTYVHNKIKACEEAGIKFKLTEFSDNCTEDEVCDAIMQFNVDPSFHGILVQLPLPQHLNEEKILNVLKLEKDVDGFHPMNMGNLAMRGREPLFIPCTPKGCVELLIRYGVDIMGKKAVVIGRSNIVGLPASLLLQRHHATVTIVTAFTANPEEITREADILISGVGVPNMVRGSWVKPGAVVVDVGTHPIEDSSCEQGYRLMGDVCYEEASRVASLITPVPGGVGPMTVAMLLCNTLESATRKYNFV 366
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fra18g01728 366 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 336 354 IPR000672 GO:0004488(InterPro)
Fra18g01728 366 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 147 174 IPR000672 GO:0004488(InterPro)
Fra18g01728 366 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 182 203 IPR000672 GO:0004488(InterPro)
Fra18g01728 366 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 106 128 IPR000672 GO:0004488(InterPro)
Fra18g01728 366 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 319 335 IPR000672 GO:0004488(InterPro)
Fra18g01728 366 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 229 249 IPR000672 GO:0004488(InterPro)
Fra18g01728 366 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 278 307 IPR000672 GO:0004488(InterPro)
Fra18g01728 366 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 195 361 IPR036291 -
Fra18g01728 366 FunFam C-1-tetrahydrofolate synthase, cytoplasmic, putative 80 220 - -
Fra18g01728 366 Pfam Tetrahydrofolate dehydrogenase-cyclohydrolase, catalytic domain 78 193 IPR020630 GO:0004488(InterPro)
Fra18g01728 366 CDD NAD-bind-m-THF-DH-Cyclohyd 189 359 IPR020631 GO:0004488(InterPro)
Fra18g01728 366 Hamap Bifunctional protein FolD [folD]. 75 363 IPR000672 GO:0004488(InterPro)
Fra18g01728 366 Pfam Tetrahydrofolate dehydrogenase-cyclohydrolase, NAD(P)-binding domain 196 362 IPR020631 GO:0004488(InterPro)
Fra18g01728 366 PANTHER C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED 74 364 - GO:0004477(PANTHER)|GO:0004488(PANTHER)|GO:0005829(PANTHER)|GO:0035999(PANTHER)
Fra18g01728 366 ProSitePatterns Tetrahydrofolate dehydrogenase-cyclohydrolase signature 2. 340 348 IPR020867 GO:0003824(InterPro)
Fra18g01728 366 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 75 194 IPR046346 -
Fra18g01728 366 Gene3D Leucine Dehydrogenase, chain A, domain 1 80 357 - -
Fra18g01728 366 Gene3D - 78 339 - -
Fra18g01728 366 FunFam Bifunctional protein FolD 212 339 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fra18g01728 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2431511 Fra Fra10g01479 Fra-Chr10:55802195 Fra18g01728 Fra-Chr18:65342386
2442026 Fra Fra17g00851 Fra-Chr17:26819865 Fra18g01728 Fra-Chr18:65342386
2461966 Fra Fra18g01728 Fra-Chr18:65342386 Fra11g00216 Fra-Chr11:2120677