AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02248 ATGGCGCTTAACTCCATCTTCTTCATCTTCTTGCTCATCCTCTTCACGATTCACTCGGTCTCTGCCGATGCGATCCAAGGCTGCGGTGGTTTCGTCGAGGCGAGTTCATCTTTGATCAAGTCAAGGAAGCCAACCGATTCCAAATTGGACTATTCGCATATCACGGTTGAGCTGCGGACAGTGGATGACTTGGTGAAGGATCGGACACAATGTGCTCCTAATGGTTACTACTTCATCCCTGTTTATGATAAGGGTTCTTTTGTTATCAAAATTAAAGGACCAGAAGGATGGTCATGGAACCCAGATCAGGTTCCCGTGCTTGTCGATCATACTGGCTGTAATCGCAACGAGGATATTAATTTTCGCTTTACAGGATTTACTATTAGTGGAAAAGTTGTGGGAGCGGTTGGTGGTGCAAGTTGTTCGTCTAAAAATGGTGGTCCGTCAAATGTAAAAGTTGATCTTTTAGATTCAAATGGGAATATTGTATCTTCTGTAAAAACGTCAGTATCTGGGAGCTACTCTTTCACCAATATTATTCCAGGACGATATTCCCTACGTGCATCCCATCAAGACTTGAATATCGAAGTCAAAGGTTCAACGGAGGTTGAATTGGGATTTGGAAATATTCAAGTGGATGATGTTTTTTTTGTCTCTGGTTATGATATTCGTGGATTGGTAGTTGCACAGGGAAACCCTATTTTGGGGGTTCACTTTTATCTGTACTCTGATGATGTTAAAGAAGTCAACTGCCCACAAGGTTCTGGTAACCCGTCTGGTGATAGAACTGCACTTTGTCACGCAATATCTGATGTTGATGGAAAGTTTACTTTCAAGTCAATTCCATGCGGTGTTTATGAGCTTATACCTTATTATAAGGGTGAAAATACAGTTTTTGATGTTTCACCTCCCTCTGCCACTGTAACAGTGCAGCATGATCATGCAACTGTTACTGAAAAGTTTCAGGTTACTGGTTTTTCTGTTGGCGGTCGTGTTGTTGATTCTGAAGGCAAAGGAGTCGATGGTGTAAAAATTGTGGTGGATGGTGTTGAGAGGTCCGTCACTGATAAACAAGGATATTATAAGCTTGATCAGGTTACATCTAAACAGTATCTGATTGAAGCGAAAAAGGAGCACTACAAGTTTGACAAATTGACAGATTTCATGGTTTTACCAAATATGGCATCGGTTGCTGATATCAAAGCGGTGTCTTATGATGTTTGTGGCTCCGTGCATACAGTTGATTCTGGTTACAAAGCAAAAGTGGCTCTGACTCATGGACCAGATAATGTTAAGCCACAAATGAAACAAACTGATAATAACGGCTATTTCTGCTTTGAGGTTCCACCTGGAGACTATCGGTTATCGGCTATTGCAGCTACACCTGAAACCGCCTCGCATCTTTTATTCTCACCACAACATATTGATTTTAATGTCAATGGTCCGTTGCTGTCACTGAAATTTTATCAGGCACAAGTTAATGTAGGTGGATCGGTTACTTGCAAAGAAAAATGTGACTCATCTGTTTTTGTTGATCTTGTAAAAGTGGATGCTAAAAGCAATGAAGAAAGACAGACAGTTGGTTTGACTGGTCAAAGTAGTGAATTTTTATTTCAAAATGTCCTACCTGGAAAATATAAGCTTGAGATCAAGCACGTTTCTAAAGAAGCTAAATCTGGAGAAGATAACTGGTGTTGGGAACAAAGCTCAGTTCTTGTTAATGCTGGAACTGAAGATGTTAACGGGATTAACTTTGTTCAGAAAGGTTATTGGGTTAACTTAGTGTCCACTCACAATGTAGATGCATATCTGCATCAATCAGATGGGTCCCATGTGGATCTGAAAATTAAGAAAGGTCCTCAGCGCATATGCATTGAATCACCCGGAGTGCACGAACTTCACTTCGTAAACTCGTGTATACTTTTTGGAACCTCGCCTGTGAAAATCGACACAGCTAATACATCACCCATTTATCTGAAAGGAGAGAAGTATCTCCTCCAAGGAGAAATTAAGGTTGAGATGACCTCACAAAACGGTGTTGACCAGTTACCTAAAAATCTAGTGGTTGACATTTTGAATGCTGAAGGAACTGTTATCGATGGCACTACTGCAAAATATGTTAATGAAAACGAACACTCAAATACGGCTCTTTATAAATATGAAGTATGGGCAAATCCTGGAGAAAAACTTACGTTTGCGCCTCGGGATATTCGGAGTGAAAATGAGAAAAGGATTTTGTTTTATCCTAGACAACATCAGGTCAAAGTGGCACAAGATGGCTGTCAAACTTCGGTTCCTCTATTTTCTGGACGACTCGGATTGTACATTGAAGGATCGGTTTCACCTCCACTACCCGATGTTACTATCAGAATCATAGCTTCTGGTGATAGTCAAAATGGTCAAATCAAGAAAAATGAATTGGCCTTTGTAACAACTACAAACGCAGACGGGTCGTTCGTTGGTGGGCCCCTTTATGATGACATCACTTACCATACCCAAGCTTCAAAGCCCGGTTATCATGTAAAGAAAATCGGACCGAATTCCTTTTCGTGCCAAAAGCTTGGTCAAATCTCGGTTCATATAAATTCTAAAGAAGATTCCAATGATTTATTCCCCTCGGTTTTATTATCATTAAGCGGGGAAGACGGTTATAGAAATAACTCGATATCTGCTGCTGGTGGAACTTTCGTATTTGATAACTTATTTCCCGGAAGTTTTTATCTCCGTCCTCTCTTAAAGGAGTACGCTTTCTCACCATCCGCACAAGCAGTTGAACTCGGGTCCGGGGAGTCAACAAAAATCGTATTCCACGCCACACGTGTTGCTTACAGTGCGATGGGTGTGGTTACTCTGTTATCGGGTCTACCAAAAGAAGGCGTTTCAGTCGAGGCTCGTTCCGACACAAAAGGTTATTACGAGGAAACTGTCACAGACTCGTTAGGAAATTACCGCCTACGTGGACTTCACCCCGATACAACTTACACGATTAAAATAGCAAAAATAAGCGGGTTTGGTACGTCTAACATTGAGCGTGCTTCCCCAGAGTCTGTTGAAGTCAACGTTGGATATGAAGACATCAAGGGATTAGATTTTTTGGTATTTGAGCAACCGGAAATGACGTTATTAACTGGAACGGTTCAAGGTAGCGGAAATAAGGAGGTTTATGAACACCTAAGGTTGGAAATTAGATCGGCTAGTGATCCGTCCAGTATCGAGTCGTTGTTACCTTTGTCAATTTCAAACTTCTTCCAGGTGAAGGGTTTGCCAAGGGGCAAACATCTGCTGCAGTTGCGGTCTACACTAACACCGCGTACCCTCAGATTTGAATCGGAAGTGGTCGAGGTTGATTTGGAGAAAAATACCCAAGTTCATGTGGGTCCCTTGACATTCAAAGTTGAAGATGATCACCACAAACAGGAATTGACTCCGGCACCTGTGTATCCGCTTATTATTGGAGTATTAGTTATTGCATTGTTTATCAGCATGCCAAGATTGAAAGACATGTACCAAAGCAATGTAGGAGCTCAGGGACCCAGTGCATCGACATGGGTCCCGGTAACAAAGAAAACCGTGCGAAAAAAGACTTACTAG 3591 41.66 MALNSIFFIFLLILFTIHSVSADAIQGCGGFVEASSSLIKSRKPTDSKLDYSHITVELRTVDDLVKDRTQCAPNGYYFIPVYDKGSFVIKIKGPEGWSWNPDQVPVLVDHTGCNRNEDINFRFTGFTISGKVVGAVGGASCSSKNGGPSNVKVDLLDSNGNIVSSVKTSVSGSYSFTNIIPGRYSLRASHQDLNIEVKGSTEVELGFGNIQVDDVFFVSGYDIRGLVVAQGNPILGVHFYLYSDDVKEVNCPQGSGNPSGDRTALCHAISDVDGKFTFKSIPCGVYELIPYYKGENTVFDVSPPSATVTVQHDHATVTEKFQVTGFSVGGRVVDSEGKGVDGVKIVVDGVERSVTDKQGYYKLDQVTSKQYLIEAKKEHYKFDKLTDFMVLPNMASVADIKAVSYDVCGSVHTVDSGYKAKVALTHGPDNVKPQMKQTDNNGYFCFEVPPGDYRLSAIAATPETASHLLFSPQHIDFNVNGPLLSLKFYQAQVNVGGSVTCKEKCDSSVFVDLVKVDAKSNEERQTVGLTGQSSEFLFQNVLPGKYKLEIKHVSKEAKSGEDNWCWEQSSVLVNAGTEDVNGINFVQKGYWVNLVSTHNVDAYLHQSDGSHVDLKIKKGPQRICIESPGVHELHFVNSCILFGTSPVKIDTANTSPIYLKGEKYLLQGEIKVEMTSQNGVDQLPKNLVVDILNAEGTVIDGTTAKYVNENEHSNTALYKYEVWANPGEKLTFAPRDIRSENEKRILFYPRQHQVKVAQDGCQTSVPLFSGRLGLYIEGSVSPPLPDVTIRIIASGDSQNGQIKKNELAFVTTTNADGSFVGGPLYDDITYHTQASKPGYHVKKIGPNSFSCQKLGQISVHINSKEDSNDLFPSVLLSLSGEDGYRNNSISAAGGTFVFDNLFPGSFYLRPLLKEYAFSPSAQAVELGSGESTKIVFHATRVAYSAMGVVTLLSGLPKEGVSVEARSDTKGYYEETVTDSLGNYRLRGLHPDTTYTIKIAKISGFGTSNIERASPESVEVNVGYEDIKGLDFLVFEQPEMTLLTGTVQGSGNKEVYEHLRLEIRSASDPSSIESLLPLSISNFFQVKGLPRGKHLLQLRSTLTPRTLRFESEVVEVDLEKNTQVHVGPLTFKVEDDHHKQELTPAPVYPLIIGVLVIALFISMPRLKDMYQSNVGAQGPSASTWVPVTKKTVRKKTY 1196
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02248 1196 Pfam BOS complex subunit NOMO1-like, beta sandwich domain 773 845 IPR055073 -
Cobi2g02248 1196 Gene3D - 328 408 - -
Cobi2g02248 1196 PANTHER CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING 2 1179 IPR051417 GO:0005789(PANTHER)
Cobi2g02248 1196 Pfam Carboxypeptidase regulatory-like domain 327 400 - -
Cobi2g02248 1196 SUPERFAMILY Cna protein B-type domain 947 1017 - -
Cobi2g02248 1196 Pfam BOS complex subunit NOMO1-like, first beta sandwich domain 45 121 IPR055075 -
Cobi2g02248 1196 SUPERFAMILY Cna protein B-type domain 867 927 - -
Cobi2g02248 1196 FunFam Carbohydrate-binding-like fold 142 214 - -
Cobi2g02248 1196 SUPERFAMILY Hypothetical protein PA1324 106 193 - -
Cobi2g02248 1196 Gene3D Immunoglobulins 140 215 IPR013783 -
Cobi2g02248 1196 SUPERFAMILY Carboxypeptidase regulatory domain-like 327 421 IPR008969 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02248 K26500 BOS complex subunit NOMO