AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mimi16g02075 ATGGCATTTAAGAATAAAGTGCAAAGTATTGTGGTTTCTGGGTGGAGAAACAATACCTTGTTGGTATCTTCTTCAAGGAGTATAAATACCTTTGCAACTGGTTTTGATAACCGAATCTTGAAATCGCCTTCTCTTGTTTCCCTTGACTTCCCTGATGTATGGAATTGTAGCTCCACCTGTTATAGTGAACCGTCTTCCTACAAACTTGCTAGTGAACACATTGCTAGAGTAATCGATGGAAAACAAATTGCTGAGAAAATTATTTCAAAGGTAGCCATTGAAGTAACAAGAATGAAGAAAGCAATTGGTGAGGTTCCAGGACTGGGTGTAATTTTAGTAGGCGAGAAAAAAGATTCCCAAATATATGTTCGTAACAAGATAAAAGCGTGTGAAGAAGCTGGAATCAAGTTTAAACTGACCAAATTTTCAGATAATTGTACTGAAGATGAAGTGTGTGAAGCTATAATGCGGTTTAATGTGGATCCATCTTTTCATGGTATCCTTGTCCAGCTTCCTCTTCCTCAGCATCTAAATGAAGAGAAGATTTTGGATGTACTGAAATTGGAAAAAGATGTAGATGGTTTTCATCCAATGAATATGGGAAACCTAGCTATGAGGGGAAGGGAACCCTTGTTCATCCCCTGCACTCCCAAAGGTTGTGTTGAGTTATTAATAAGATATGGTGTGGAAATTATGGGTAAGAAAGCTGTTGTTATAGGAAGAAGCAACATTGTTGGTTTACCCACATCCTTGTTGTTACAGAGACACCATGCAACAGTTACCATTGTGACTGCATTAACATCAAAACCTGAAGAAATCACACGCGAGGCTGATATTTTGATAAGTGGTGTAGGAGTCCCTAATATGGTTCGTGGAAGCTGGGTGAAGCCTGGTGCTGTGGTGGTTGATGTTGGAACTTATCCAATTGAGGACACAAGTTGTGCGCTAGGGTATCGGCTGATTGGAGATGTATGCTATGAGGAAGCATCAAGGGTAGCTTCTTTGATCACCCCTGTTCCAGGAGGAGTCGGGCCCATGACTATTGCTATGCTGCTTTACAACACTCTTGAATCTGCTACGCTTTCCTGGACAACAGCAGCTTGTTCACCAGTTTCTGATCAGAAGCACAAGTGGTACAGTTGCAGGTCTTGGGGACAAAGGCACAAACACCAAACGGTTTGTTCGGAAGCTGACAGTCTATGCCAAAACAACACGGCATGTTCGAACACGTGGATGGATCGGTTGCCATCACACAACATTTGCACACCAAGCATACCTGAAACGGGCCGAGCTTCCTCCGTTGCCCACCGTGGTCCAGTTCAGCCGCTACGCGGTATTCACTCCGCCCCATTGCCACAGGCACCGGTACTGGAAGCAGTGACACATGAAAAGAAAGAGGAAGAGGAAGAGGAAGATGAAGGTGATGTGATTAAGGGCTTCCATGACAATAATCATAGAACACAAAGAGAGGTTGAAGAAAGAGGAGACAAAAGACATGATGTTTTTGAATGA 1512 42.86 MAFKNKVQSIVVSGWRNNTLLVSSSRSINTFATGFDNRILKSPSLVSLDFPDVWNCSSTCYSEPSSYKLASEHIARVIDGKQIAEKIISKVAIEVTRMKKAIGEVPGLGVILVGEKKDSQIYVRNKIKACEEAGIKFKLTKFSDNCTEDEVCEAIMRFNVDPSFHGILVQLPLPQHLNEEKILDVLKLEKDVDGFHPMNMGNLAMRGREPLFIPCTPKGCVELLIRYGVEIMGKKAVVIGRSNIVGLPTSLLLQRHHATVTIVTALTSKPEEITREADILISGVGVPNMVRGSWVKPGAVVVDVGTYPIEDTSCALGYRLIGDVCYEEASRVASLITPVPGGVGPMTIAMLLYNTLESATLSWTTAACSPVSDQKHKWYSCRSWGQRHKHQTVCSEADSLCQNNTACSNTWMDRLPSHNICTPSIPETGRASSVAHRGPVQPLRGIHSAPLPQAPVLEAVTHEKKEEEEEEDEGDVIKGFHDNNHRTQREVEERGDKRHDVFE 503
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mimi16g02075 503 PANTHER C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED 75 360 - GO:0004477(PANTHER)|GO:0004488(PANTHER)|GO:0005829(PANTHER)|GO:0035999(PANTHER)
Mimi16g02075 503 ProSitePatterns Tetrahydrofolate dehydrogenase-cyclohydrolase signature 2. 340 348 IPR020867 GO:0003824(InterPro)
Mimi16g02075 503 FunFam C-1-tetrahydrofolate synthase, cytoplasmic, putative 80 220 - -
Mimi16g02075 503 Pfam Tetrahydrofolate dehydrogenase-cyclohydrolase, NAD(P)-binding domain 196 360 IPR020631 GO:0004488(InterPro)
Mimi16g02075 503 Hamap Bifunctional protein FolD [folD]. 75 363 IPR000672 GO:0004488(InterPro)
Mimi16g02075 503 MobiDBLite consensus disorder prediction 428 503 - -
Mimi16g02075 503 Gene3D - 78 339 - -
Mimi16g02075 503 MobiDBLite consensus disorder prediction 476 503 - -
Mimi16g02075 503 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 195 359 IPR036291 -
Mimi16g02075 503 CDD NAD-bind-m-THF-DH-Cyclohyd 189 359 IPR020631 GO:0004488(InterPro)
Mimi16g02075 503 Gene3D Leucine Dehydrogenase, chain A, domain 1 80 357 - -
Mimi16g02075 503 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 75 194 IPR046346 -
Mimi16g02075 503 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 319 335 IPR000672 GO:0004488(InterPro)
Mimi16g02075 503 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 336 354 IPR000672 GO:0004488(InterPro)
Mimi16g02075 503 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 106 128 IPR000672 GO:0004488(InterPro)
Mimi16g02075 503 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 229 249 IPR000672 GO:0004488(InterPro)
Mimi16g02075 503 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 278 307 IPR000672 GO:0004488(InterPro)
Mimi16g02075 503 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 147 174 IPR000672 GO:0004488(InterPro)
Mimi16g02075 503 PRINTS Tetrahydrofolate dehydrogenase-cyclohydrolase family signature 182 203 IPR000672 GO:0004488(InterPro)
Mimi16g02075 503 Pfam Tetrahydrofolate dehydrogenase-cyclohydrolase, catalytic domain 78 193 IPR020630 GO:0004488(InterPro)
Mimi16g02075 503 FunFam Bifunctional protein FolD 212 339 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mimi16g02075 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3981847 Mimi Mimi16g02075 Mimi-Chr16:82803186 Mimi17g02813 Mimi-Chr17:90363800