AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi2g02246 ATGACGACGGCGTGGATCGATAGCATTATAAAAGACTTAATTCATAGCTCGACTGACGTGTCTATACCTCACCTGATTCAAAATGTAAGGGATATTATAAATCCCTGTAACCCTAATTTGGCAACTCTACTTGAATACCGGCTTCGTTCATTGACAGAGCCTCCGAATCTGGAACCTGTTCATGATACGACTGATAGCTTCATTTCTAGGGTTCCGGTGAGAGGAAAAGAGGCGCAAACGTCTTCTTCTGCCAGACAACCACCTCCGGTGATTGAAGGTATGTTTCCACTGGATTTACAGCAGTTATTAAACACACACAGCCATCTGGATTGGCCCGGTAACGATTACACCGCCACCGTACCTCCTCCGGCTACGGCAGTTATATCTGAATCAAACAATTCAGACTCACCACAACAACATAATCCATCACAACCACCGCCACCGCCACCGCCACCACCATTTCAAAACACGGCTACACAAGCCGCGGCAATGGCTTTACGAGAGAAGCAACGGGAAGAGATACGGCAACAGAAACGAGACGAAGAAGGCCTACACCTTCTTACTTTACTTCTACAATGTGCCGAAGCAGTTTCCGCTAATAATCTCGAAGAAGCAAACAAGATGTTACTCGAAATCTCGGAGCTCTCAACGCCTTACGGCACTGCAGCACAGCGCGTCGCAGCGTACTTCTCCGAAGCCATGTCCGCGAGACTAATGACCTCCTCACTCGGAATATTCTCCACACTCCCTCCGAACATAACCGTTACCCACGGCCTGAAAAAGATAACATCTGCTTTCCAAATCTTCAACGGCATAAGCCCGTTCGTCAAATTCTCACATTTCACCGCAAACCAAGCGATACAAGAAGCATTTGAACGAGAAGACCGGGTTCACATTATCGATCTAGACATCATGCAAGGGTTGCAATGGCCCGGTCTTTTCCACATATTAGCATCCCGACCCGGTGGGCCGCCGTTTGTGCGGCTCACCGGGTTGGGCAACTCGTTAGATGCCCTCGAGGCGACTGGGAAACGTTTGTCGGATTTTGCGGAGAAACTCGGGCTCCCGTTTGAGTTCTCGGCTGTAGCTGATAAGGTTGGGAACTTGAACCCGGAGAGGTTAAAGGTTAGCAAGAGGGAGGCGGTTGCTGTTCATTGGTTGCAACATTCATTATATGATGTCACTGGATCCGACACCAATACTCTATGGTTCCTCCAAAGATTGGCTCCAAAAGTGGTGACGGTAGTCGAGCAGGATTTGAGCCATGCAGGGTCGTTTTTGGGAAGATTTGTGGAGGCGATTCACTACTACTCGGCATTGTTTGACTCGTTGGGGTCAAGTTATGGAGAAGAGAGTGAAGAAAGACATGTGGTGGAACAACAGTTGCTATCTAAGGAGATTAGGAACGTGTTGGCGATAGGGGGTCCGTCGAGAAGTGGGGAGGTGAAGTTCAATAATTGGAGGGAGAAGTTGGAGCAATGTGGGTTCAAGGGTATATCTTTGGCGGGAAATGCGGCAGCTCAAGCGACACTTTTGTTAGGGATGTTTCCGTCTAATGGCTACACATTGGTGGAGGATAAGGGCACACTTAAGCTTGGATGGAAAGACCTTTGTTTGCTTACTGCCTCTGCATGGAGACCTTAG 1644 48.6 MTTAWIDSIIKDLIHSSTDVSIPHLIQNVRDIINPCNPNLATLLEYRLRSLTEPPNLEPVHDTTDSFISRVPVRGKEAQTSSSARQPPPVIEGMFPLDLQQLLNTHSHLDWPGNDYTATVPPPATAVISESNNSDSPQQHNPSQPPPPPPPPPFQNTATQAAAMALREKQREEIRQQKRDEEGLHLLTLLLQCAEAVSANNLEEANKMLLEISELSTPYGTAAQRVAAYFSEAMSARLMTSSLGIFSTLPPNITVTHGLKKITSAFQIFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGNSLDALEATGKRLSDFAEKLGLPFEFSAVADKVGNLNPERLKVSKREAVAVHWLQHSLYDVTGSDTNTLWFLQRLAPKVVTVVEQDLSHAGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSKEIRNVLAIGGPSRSGEVKFNNWREKLEQCGFKGISLAGNAAAQATLLLGMFPSNGYTLVEDKGTLKLGWKDLCLLTASAWRP 547
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi2g02246 547 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 169 545 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009630(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0051457(PANTHER)|GO:0090610(PANTHER)
Cobi2g02246 547 MobiDBLite consensus disorder prediction 113 159 - -
Cobi2g02246 547 Pfam GRAS domain family 187 546 IPR005202 -
Cobi2g02246 547 MobiDBLite consensus disorder prediction 124 139 - -
Cobi2g02246 547 ProSiteProfiles GRAS family profile. 177 546 IPR005202 -
Cobi2g02246 547 MobiDBLite consensus disorder prediction 140 156 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi2g02246 K27742 protein SCARECROW
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1784203 Cobi Cobi10g02025 Cobi-Chr10:52005097 Cobi2g02246 Cobi-Chr2:69050500
1792369 Cobi Cobi1g03664 Cobi-Chr1:85233474 Cobi2g02246 Cobi-Chr2:69050500
1795193 Cobi Cobi2g02246 Cobi-Chr2:69050500 Cobi6g02649 Cobi-Chr6:22704938
1819322 Cobi Cobi1g03464 Cobi-Chr1:83683842 Cobi2g02246 Cobi-Chr2:69050500
1821761 Cobi Cobi5g00106 Cobi-Chr5:1832672 Cobi2g02246 Cobi-Chr2:69050500
1849454 Cobi Cobi2g02246 Cobi-Chr2:69050500 Cobi6g01040 Cobi-Chr6:8351502
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cobi2g00576 . 27 533 GRAS Transcription Factor family AT1G14920 57.692 0.0 592.0
Cobi3g00773 . 40 444 GRAS Transcription Factor family AT1G55580 48.086 6.47e-117 347.0
Cobi3g01418 . 275 361 GRAS Transcription Factor family AT4G37650 50.575 1.68e-23 92.4
Cobi1g03357 . 152 519 GRAS Transcription Factor family AT5G17490 23.919 6.13e-22 96.3
Cobi1g03464 . 49 515 GRAS Transcription Factor family AT5G17490 32.136 1.63e-55 192.0
Cobi1g03664 . 144 507 GRAS Transcription Factor family AT1G66350 44.591 1.91e-99 313.0
Cobi1g03853 ACH 10 510 GRAS Transcription Factor family AT3G13840 47.961 2.09e-144 423.0
Cobi1g04188 . 165 529 GRAS Transcription Factor family AT1G14920 35.768 3.77e-70 233.0
Cobi1g04748 ACH,WGDA 37 484 GRAS Transcription Factor family AT4G36710 46.903 1.96e-129 383.0
Cobi1g05025 . 24 478 GRAS Transcription Factor family AT1G50420 35.512 5.50e-97 297.0
Cobi2g03017 . 161 529 GRAS Transcription Factor family AT1G14920 34.704 4.71e-70 232.0
Cobi2g02246 . 250 651 GRAS Transcription Factor family AT3G54220 82.426 0.0 655.0
Cobi2g01886 . 4 482 GRAS Transcription Factor family AT1G50420 60.752 0.0 574.0
Cobi2g01389 ACH 31 640 GRAS Transcription Factor family AT5G52510 45.353 1.89e-135 408.0
Cobi11g00032 ACH 179 640 GRAS Transcription Factor family AT5G52510 43.644 1.79e-115 353.0
Cobi11g00255 . 86 766 GRAS Transcription Factor family AT1G07530 43.377 0.0 535.0
Cobi11g00947 ACH,WGDA 37 486 GRAS Transcription Factor family AT4G36710 47.246 3.76e-136 402.0
Cobi11g02550 . 34 490 GRAS Transcription Factor family AT5G48150 63.974 0.0 583.0
Cobi11g02837 . 178 547 GRAS Transcription Factor family AT3G03450 28.831 1.96e-56 195.0
Cobi11g02838 . 150 507 GRAS Transcription Factor family AT1G66350 29.63 1.11e-55 192.0
Cobi9g00343 . 15 764 GRAS Transcription Factor family AT1G07530 47.197 0.0 641.0
Cobi9g00277 . 73 713 GRAS Transcription Factor family AT2G37650 52.632 0.0 630.0
Cobi5g02811 . 15 530 GRAS Transcription Factor family AT1G14920 62.335 0.0 646.0
Cobi6g02350 ACH,WGDA 37 486 GRAS Transcription Factor family AT4G36710 45.969 4.55e-126 374.0
Cobi6g01986 . 22 507 GRAS Transcription Factor family AT1G66350 30.725 1.21e-70 233.0
Cobi6g01684 . 53 413 GRAS Transcription Factor family AT2G04890 31.429 2.02e-50 175.0
Cobi6g01683 . 154 519 GRAS Transcription Factor family AT5G17490 33.333 1.25e-51 179.0
Cobi6g01428 . 118 489 GRAS Transcription Factor family AT5G48150 64.516 6.78e-176 502.0
Cobi4g00989 . 73 714 GRAS Transcription Factor family AT2G37650 53.333 0.0 665.0
Cobi5g01062 . 1 525 GRAS Transcription Factor family AT4G17230 52.363 3.80e-179 511.0
Cobi10g02025 . 272 650 GRAS Transcription Factor family AT3G54220 53.985 2.98e-144 426.0
Cobi12g02103 . 42 444 GRAS Transcription Factor family AT1G55580 48.786 7.90e-123 361.0
Cobi12g01566 . 141 530 GRAS Transcription Factor family AT4G37650 52.696 8.71e-138 403.0
Cobi12g01339 . 1 654 GRAS Transcription Factor family AT1G63100 48.949 0.0 533.0
Cobi12g01287 WGDA 187 555 GRAS Transcription Factor family AT4G00150 45.669 2.39e-99 308.0
Cobi12g01255 . 170 546 GRAS Transcription Factor family AT3G03450 27.665 9.11e-47 169.0
Cobi12g01254 WGDA 170 547 GRAS Transcription Factor family AT3G03450 30.0 2.07e-54 190.0
Cobi12g01253 WGDA 170 547 GRAS Transcription Factor family AT3G03450 28.021 2.37e-51 181.0
Cobi12g00224 . 17 530 GRAS Transcription Factor family AT1G14920 64.739 0.0 671.0
Cobi6g00210 . 20 745 GRAS Transcription Factor family AT1G07530 46.54 0.0 603.0
Cobi6g01040 . 86 651 GRAS Transcription Factor family AT3G54220 65.466 0.0 726.0
Cobi10g02845 . 454 510 GRAS Transcription Factor family AT3G13840 43.86 2.21e-09 52.0
Cobi3g02743 . 40 444 GRAS Transcription Factor family AT1G55580 49.524 7.80e-119 353.0
Cobi3g02038 ACH 1 530 GRAS Transcription Factor family AT4G37650 56.806 0.0 545.0
Cobi5g00106 . 2 405 GRAS Transcription Factor family AT5G41920 62.175 1.05e-179 506.0
Cobi9g03285 ACH 142 530 GRAS Transcription Factor family AT4G37650 60.411 2.12e-164 473.0
Cobi9g02601 . 73 714 GRAS Transcription Factor family AT2G37650 45.975 0.0 533.0
Cobi2g03741 . 40 445 GRAS Transcription Factor family AT1G55580 46.341 9.19e-106 317.0
Cobi7g01925 . 27 529 GRAS Transcription Factor family AT1G14920 49.027 4.29e-163 472.0
Cobi7g01590 ACH 9 510 GRAS Transcription Factor family AT3G13840 46.756 3.34e-145 426.0
Cobi7g01454 . 134 593 GRAS Transcription Factor family AT1G21450 59.101 0.0 553.0
Cobi7g01048 . 59 581 GRAS Transcription Factor family AT3G46600 44.991 2.24e-154 454.0
Cobi7g01047 . 264 769 GRAS Transcription Factor family AT1G07530 47.701 1.81e-168 496.0
Cobi7g01046 . 20 767 GRAS Transcription Factor family AT1G07530 47.299 0.0 615.0
Cobi8g02248 . 12 409 GRAS Transcription Factor family AT3G49950 60.287 0.0 513.0
Cobi8g02370 . 96 555 GRAS Transcription Factor family AT4G00150 50.096 1.29e-152 450.0
Cobi1g02001 . 149 593 GRAS Transcription Factor family AT1G21450 63.111 0.0 579.0
Cobi2g01021 . 55 714 GRAS Transcription Factor family AT2G37650 46.131 0.0 540.0
Cobi6g03756 WGDA 205 555 GRAS Transcription Factor family AT4G00150 47.527 5.89e-104 323.0
Cobi6g03848 WGDA 170 547 GRAS Transcription Factor family AT3G03450 29.563 8.23e-56 194.0
Cobi10g00909 . 6 760 GRAS Transcription Factor family AT1G07530 40.516 1.03e-179 530.0
Cobi5g01834 . 39 525 GRAS Transcription Factor family AT4G17230 49.194 6.81e-163 471.0
Cobi2g03835 . 40 490 GRAS Transcription Factor family AT5G48150 67.105 0.0 616.0
Cobi2g01030 . 243 714 GRAS Transcription Factor family AT2G37650 53.527 4.18e-172 505.0
Cobi2g01041 . 226 767 GRAS Transcription Factor family AT1G07530 46.863 4.77e-164 489.0
Cobih2tg0662l_1g00004 . 8 407 GRAS Transcription Factor family AT3G49950 44.893 7.35e-117 346.0
Cobih2tg0771l_1g00009 . 250 651 GRAS Transcription Factor family AT3G54220 82.426 0.0 655.0
Cobih2tg0776l_1g00006 . 68 490 GRAS Transcription Factor family AT5G48150 62.648 0.0 537.0
Cobi9g01333 . 7 482 GRAS Transcription Factor family AT1G50420 61.042 0.0 577.0
Cobi9g02010 . 45 545 GRAS Transcription Factor family AT3G03450 65.076 0.0 675.0
Cobi9g02222 ACH,WGDA 37 486 GRAS Transcription Factor family AT4G36710 49.145 6.77e-137 403.0
Cobi4g03189 . 59 490 GRAS Transcription Factor family AT5G48150 63.265 0.0 553.0
Cobi4g02924 . 19 489 GRAS Transcription Factor family AT5G48150 51.69 1.47e-173 497.0
Cobi4g02796 . 132 506 GRAS Transcription Factor family AT1G66350 34.739 1.40e-64 216.0
Cobi4g02536 . 41 490 GRAS Transcription Factor family AT5G48150 62.664 0.0 565.0
Cobi6g02764 . 298 653 GRAS Transcription Factor family AT3G54220 36.533 4.58e-54 190.0
Cobi6g02649 . 141 507 GRAS Transcription Factor family AT1G66350 44.882 2.07e-102 319.0
Cobi8g00432 . 8 407 GRAS Transcription Factor family AT3G49950 44.893 6.06e-117 346.0
Cobi8g00667 . 39 334 GRAS Transcription Factor family AT4G17230 43.144 3.31e-72 229.0
Cobi8g01117 . 1 584 GRAS Transcription Factor family AT5G66770 53.974 0.0 546.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Cobi GRAS 4.4e-130 CL0063 TF GRAS