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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00510 ATGCAGTCAATAGGCTCATTGCAAACCAAGTACTCCATCGGTGCATTCGAACTTCTGAGCAAAACGGCTCCAATTCAGGCCCTATCGCTCCTTATATTTGGCCCGTTCATCGACTATTATCTAAGTGGAAATCTTGTATCAACTTACATGAAAACCATATCCTGGGGTGCGATTTTGTTCATACTCATTTCATGTGCATTGGCGGTTTTCTGCAACATTAGCCAGTACCTTTGCATAGGGCGGTTTTCAGGAGTTTCGTTTCAAGTTTTGGGTCATATGAAAACAGTTTGTGTGTTGACTTTGGGTTGGCTTTTGTTTGACTCGGAGTTGACTTTCAAGAACATTATGGGGATGCTTGTTGCTGTTGGTGGCATGGTGGTCTATAGTTGGGCTGTTGAAGTTGAAAAGGCTGATATCAAAGCAACACTAGTTGTTAAAAATGGTTTAACTGAAGAGGAATTGAATTTGTTAAAAGATGGAATGGAAGACCATCCAATCAAGGATTATAAGCTTGGTGAATCTAAAGAAATAGAAGTCCTTGATATTTAG 549 40.07 MQSIGSLQTKYSIGAFELLSKTAPIQALSLLIFGPFIDYYLSGNLVSTYMKTISWGAILFILISCALAVFCNISQYLCIGRFSGVSFQVLGHMKTVCVLTLGWLLFDSELTFKNIMGMLVAVGGMVVYSWAVEVEKADIKATLVVKNGLTEEELNLLKDGMEDHPIKDYKLGESKEIEVLDI 182
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00510 182 PANTHER SOLUTE CARRIER FAMILY 35 7 131 IPR050186 GO:0005338(PANTHER)|GO:0005459(PANTHER)|GO:0005794(PANTHER)|GO:0015297(PANTHER)
Smso28g00510 182 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 130 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00510 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
337973 Smso28g00510 Smso1g03583
357514 Smso1g03583 Smso28g00510
429027 Smso1g03583 Smso28g00510
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4984989 Smso Smso28g00510 Smso-Chr28:14096146 Smso4g00045 Smso-Chr4:513726
5027946 Smso Smso1g03583 Smso-Chr1:120953753 Smso28g00510 Smso-Chr28:14096146