AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04275 ATGGCAACGCAATGGAAACTCGCCGATCACCCGAAGCTTCCCAAAGGAAAGATGATCGCCGTCGTCGTTTTAGACGGTTGGGGTGAAGCTTCGCCGGACCAATACAATTGCATTCATGTCGCCGAAACTCCAACAATGGATTCTCTCAAAAACAGTGCTCCTGATCGATGGAGATTGGTGAGGGCTCATGGTACTGCTGTGGGGCTTCCAACAGAGGATGATATGGGGAATAGTGAAGTCGGACATAATGCTCTTGGTGCTGGAAGAATTTTTGCTCAAGGTGCAAAGCTTGTGGATCTTGCTCTTGCTTCTGGTAAAATATATGAAGATGAAGGTTTCAATTACATCAAGGAATCTTTTGCTAACAACACCCTGCATCTTATTGGATTGATGAGTGATGGAGGTGTGCACTCTCGACTTGATCAGTTACAATTGTTGCTCAAAGGTGCTAGTGAACGCGGTGCCAAGAGGATACGCGTTCATGTACTGACTGATGGTCGCGATGTTGTAGATGGTACAAGTGTCGGTTTTGCAGAAACACTTGAAAAAGATTTAGCAGAGTTACGCGGTAAAGGCATTGATGCACAAGTTGCTTCTGGTGGGGGCCGCATGTATGTCACCATGGATCGTTACGAGAACGATTGGGAAGTTGTGAAACGCGGTTGGGATGCTCAAGTTCTTGGTGAAGCGCCACACAAATTCAAAAATGCTTTTGAGGGAATCAAGAAGTTGAGAGAAGAACCGAATGCTAATGATCAATATTTACCGCCATTTGTAATTGTTGATGACAACGGGAAGCCTGTGGGTCCCATAATGGATGGTGATGCGGTTGTTACATTCAATTTTAGAGCGGATCGTATGACAATGCTTGCACAAGCACTCGAGTATGAAAAGTTTGATAAATTCGATAGAGTTAGGTTCCCGAAGATTCGTTATGCAGGAATGCTTCAATATGATGGAGAGTTGAAGCTTCCAAAACATTATCTTGTTTCTCCTCCATTGATTGAGAGGACTTCTGGCGAATATCTTGTTAATAACGGTATTCGTACCTTTGCTTGCAGTGAAACAGTCAAATTTGGTCATGTTACATTTTTCTGGAATGGAAACCGTTCTGGGTATTTTAATTCAGAATTAGAGGAATATGTGGAAATTCCAAGTGATAGTGGAATTACTTTTAATGTCCAACCAAAGATGAAGGCTTTGGAGATTGGTGAAAAAGCTCGTGATGTCATACTCAGTCGCAAGTTTGACCAGGTAAGGGTTAATATTCCAAATGGTGATATGGTTGGTCATACTGGTGACATTGAGGCTACAATTGTGGCATGTAAAGCTGCTGATGAAGCTGTTAAGATGATTCTTGATGCAATAACAGAAGTGGGAGGAATATATTTGGTGACTGCAGATCACGGTAATGCAGAAGACATGGTGAAAAGAAATAAGAAAGGAGAGCCTATTGTTGGCAAGGATGGCAAAGTTCAGATTCAAACCTCACACACGCTTCAACCGGTGCCGGTTGCAATTGGAGGTCCGGGATTAGCAGGAGGTGTGAAATACCGCAAGGATGTACCGGACAGTGGCCTCGCAAATGTAGCAGCAACTGTTATGAATCTGCATGGTTTTGTGGCTCCTGATGATTATGAGACAACTCTTATTGAGGTTGTGGATTAA 1668 43.29 MATQWKLADHPKLPKGKMIAVVVLDGWGEASPDQYNCIHVAETPTMDSLKNSAPDRWRLVRAHGTAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYEDEGFNYIKESFANNTLHLIGLMSDGGVHSRLDQLQLLLKGASERGAKRIRVHVLTDGRDVVDGTSVGFAETLEKDLAELRGKGIDAQVASGGGRMYVTMDRYENDWEVVKRGWDAQVLGEAPHKFKNAFEGIKKLREEPNANDQYLPPFVIVDDNGKPVGPIMDGDAVVTFNFRADRMTMLAQALEYEKFDKFDRVRFPKIRYAGMLQYDGELKLPKHYLVSPPLIERTSGEYLVNNGIRTFACSETVKFGHVTFFWNGNRSGYFNSELEEYVEIPSDSGITFNVQPKMKALEIGEKARDVILSRKFDQVRVNIPNGDMVGHTGDIEATIVACKAADEAVKMILDAITEVGGIYLVTADHGNAEDMVKRNKKGEPIVGKDGKVQIQTSHTLQPVPVAIGGPGLAGGVKYRKDVPDSGLANVAATVMNLHGFVAPDDYETTLIEVVD 555
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04275 555 SUPERFAMILY Alkaline phosphatase-like 19 545 IPR017850 -
Stre1g04275 555 SUPERFAMILY 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 93 328 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Stre1g04275 555 FunFam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 93 336 - -
Stre1g04275 555 Pfam Metalloenzyme superfamily 18 540 IPR006124 GO:0003824(InterPro)|GO:0046872(InterPro)
Stre1g04275 555 Gene3D - 93 337 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Stre1g04275 555 NCBIfam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 19 546 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Stre1g04275 555 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 5 552 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)|GO:0030145(PANTHER)|GO:0044262(PANTHER)|GO:0046537(PANTHER)
Stre1g04275 555 PIRSF IPGAM 12 554 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Stre1g04275 555 CDD iPGM 17 551 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Stre1g04275 555 Gene3D Alkaline Phosphatase, subunit A 20 543 IPR017850 -
Stre1g04275 555 Pfam BPG-independent PGAM N-terminus (iPGM-N) 99 319 IPR011258 GO:0004619(InterPro)|GO:0005737(InterPro)|GO:0006007(InterPro)|GO:0030145(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04275 K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
159142 Stre1g04275 Stre8g00212
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5190453 Stre Stre1g03908 Stre-Chr1:123442279 Stre1g04275 Stre-Chr1:128711528
5190735 Stre Stre1g04275 Stre-Chr1:128711528 Stre1g04289 Stre-Chr1:128941188
5228944 Stre Stre1g04275 Stre-Chr1:128711528 Stre8g00212 Stre-Chr8:4348624