AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi31g02042 ATGGCAACCTCCGGAACCAATTGGAAACTCGGCGATCACCCCAAACTACCCAAAGGAAAGACCATCGCCGTCGTCGTTTTGGACGGTTGGGGAGAAGCCGCACCGGACAAATACAATTGCATCCATGTCGCCGAGACGCCAACCATGGATTCTCTCAAAACCAGTGCGCCCGATCGATGGAGATTGGTGAAGGCTCATGGTAAGGCCGTGGGGCTTCCCACCGATGACGACATGGGGAACAGTGAAGTCGGGCATAATGCACTTGGCGCAGGACGAATTTTTGCTCAAGGTGCAAAACTTGTTGATCTTGCTCTTGCCTCGGGGAAAATTTATGAAGATGAAGGTTTCAATTACATCAAGGAATCTTTCGCGAATAACACCTTGCACCTTATTGGATTGATGAGCGATGGGGGTGTGCACTCGCGCCTTGACCAATTACAGTTGCTGCTCAAAGGTGCTAGTGAGCGGGGTGCCAAGAGGATACGCGTTCATGTACTTACTGATGGTCGTGATGTTGTGGATGGTTCAAGTGTCGGCTTTGCAGAAACACTTGAAAAGGATCTTGCCGAGCTTCGTGGTAAAGGCATTGATGCGCAGGTTGCTTCTGGTGGAGGCCGCATGTATGTCACCTTGGACCGTTATGAGAACGACTGGGAAGTTGTGAAACGCGGTTGGGATGCTCAGGTTCTCGGTGAAGCCCCACACAAATTCAAAAATGTTGTTGAGGCAATCAAGAAGTTGAGGGAAGCTCCCAATGCCAATGACCAATACTTACCACCATTTGTGATTGTTGACGAGAGCGGGAAGCCAGTGGGCCCCATTAACGACGGTGATGCAGTTGTCACATTCAACTTCCGAGCTGATCGTATGACAATGCTTGCACAAGCTCTCGAGTACGACAAGTTTGATAAGTTTGATAGAGTGAGGTTCCCCAAAATCCGCTACGCGGGAATGCTTCAGTATGATGGGGAGTTGAAGCTTCCAAATCATTATCTTGTTTCGCCTCCATTGATAGAGAGGACTTCTGGTGAATATCTAGTAAAAAATGGTATCCGCACCTTTGCTTGCAGTGAAACAGTGAAATTTGGTCATGTTACATTTTTCTGGAACGGGAATCGCTCGGGATGTTTTAATTCGGAGTTAGAGAAATATGTGGAAATTCCAAGCGATAGTGGAATTACGTTCAACGTCCAACCGAAGATGAAGGCTTTGGAGGTTGGTGAGAAAGCCCGAGAAGCCATTCTTAGTCGCAAGTTTGACCAGGTAAGAGTGAATATACCAAATGGTGACATGGTTGGGCATACTGGTGACATTGAGGCTACAGTTGTTGCCTGCAAGGCTGCTGATGAAGCTGTTAAGATGCTCCTTGATGCAATACAAGAAGTGGGCGGAATATATGTGGTGACTGCGGATCATGGTAATGCAGAAGACATGGTGAAGAGAGACAAGAAGGGGGAGCCTATTATTGGCAAGGATGGCAAAATTCAGATCCAAACCTCTCACACTCTTCAACCGGTGCCGGTTGCGATTGGTGGCCCTGGATTAGCAAAAGGTGTTAAGTATCGCAAGGATGTATCGGATGGTGGACTAGCAAATGTAGCTGCAACCGTGATTAATCTACATGGTTTTGTGGCTCCCGATGACTACGAGACAACACTTATTGAAGTTGTTGATTAA 1677 47.58 MATSGTNWKLGDHPKLPKGKTIAVVVLDGWGEAAPDKYNCIHVAETPTMDSLKTSAPDRWRLVKAHGKAVGLPTDDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYEDEGFNYIKESFANNTLHLIGLMSDGGVHSRLDQLQLLLKGASERGAKRIRVHVLTDGRDVVDGSSVGFAETLEKDLAELRGKGIDAQVASGGGRMYVTLDRYENDWEVVKRGWDAQVLGEAPHKFKNVVEAIKKLREAPNANDQYLPPFVIVDESGKPVGPINDGDAVVTFNFRADRMTMLAQALEYDKFDKFDRVRFPKIRYAGMLQYDGELKLPNHYLVSPPLIERTSGEYLVKNGIRTFACSETVKFGHVTFFWNGNRSGCFNSELEKYVEIPSDSGITFNVQPKMKALEVGEKAREAILSRKFDQVRVNIPNGDMVGHTGDIEATVVACKAADEAVKMLLDAIQEVGGIYVVTADHGNAEDMVKRDKKGEPIIGKDGKIQIQTSHTLQPVPVAIGGPGLAKGVKYRKDVSDGGLANVAATVINLHGFVAPDDYETTLIEVVD 558
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi31g02042 558 CDD iPGM 20 554 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Dapi31g02042 558 Gene3D Alkaline Phosphatase, subunit A 23 546 IPR017850 -
Dapi31g02042 558 SUPERFAMILY Alkaline phosphatase-like 21 548 IPR017850 -
Dapi31g02042 558 PIRSF IPGAM 15 557 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Dapi31g02042 558 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 8 555 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)|GO:0030145(PANTHER)|GO:0044262(PANTHER)|GO:0046537(PANTHER)
Dapi31g02042 558 NCBIfam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 21 549 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Dapi31g02042 558 Gene3D - 96 340 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Dapi31g02042 558 Pfam BPG-independent PGAM N-terminus (iPGM-N) 102 322 IPR011258 GO:0004619(InterPro)|GO:0005737(InterPro)|GO:0006007(InterPro)|GO:0030145(InterPro)
Dapi31g02042 558 SUPERFAMILY 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 96 331 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Dapi31g02042 558 FunFam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 96 339 - -
Dapi31g02042 558 Pfam Metalloenzyme superfamily 20 543 IPR006124 GO:0003824(InterPro)|GO:0046872(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi31g02042 K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
80506 Dapi27g00144 Dapi31g02042
249065 Dapi31g02042 Dapi4g01830
390173 Dapi31g02042 Dapi4g01830
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1903382 Dapi Dapi17g02744 Dapi-Chr17:138889091 Dapi31g02042 Dapi-Chr31:101000966
1910715 Dapi Dapi1g02164 Dapi-Chr1:121693868 Dapi31g02042 Dapi-Chr31:101000966
1936370 Dapi Dapi31g02042 Dapi-Chr31:101000966 Dapi4g01834 Dapi-Chr4:115247210
1986843 Dapi Dapi11g00144 Dapi-Chr11:2433985 Dapi31g02042 Dapi-Chr31:101000966
2024854 Dapi Dapi20g01766 Dapi-Chr20:106390780 Dapi31g02042 Dapi-Chr31:101000966
2045286 Dapi Dapi27g00144 Dapi-Chr27:2701732 Dapi31g02042 Dapi-Chr31:101000966
2049498 Dapi Dapi31g02042 Dapi-Chr31:101000966 Dapi4g01829 Dapi-Chr4:115079691