AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu31g02166 ATGGACATCGAAAAGAAAGACGAACTACCACTCAGATCCGCCAATCCCACCACCGGAGACCAGAAAAAACTCAAACGCCGGAGATGCATCATCATCTGCTCATCAATACTCGCAGTAATCCTCATGATCGCATTAATACTACTCATCTTATCCTTAACCGTCTTTAAAGCCAAAAAACCAGTCCTAACAGTCAATTCAGTGGCGCTAGACGACTTCGACGTAAACATAACTCCATTACCACCTAAAATATCCTTAAACCTTTCACTCGCTTTAGACCTGACAATTAAGAATCCTAACAAAGTCGGTATCAAGTACCAGCCCAGCTCGGCTATTCTCCGGTACAAAGGGAGAGATGTTGGTGATGTTCCCATACCCGCTGGGAAAATTGGAGCGGATGGTATCGAGCGCTTGAATCTTACGGTTGTTCTTTTTGCTGATCGGTTGCTTACGGATTCTGAGATATATAGGGATGTTCTTGGAGGTAATTTGCCGTTTTCGACTTATACAAGAATTAAAGCTAAAGCTCGTGTGGTGTTTTTTAATGTTCATGTTACATCTACGTCGACTTGTGATGTGAATATTGATATTGGAAGTAGAAGTATTTCGAATCAGACTTGTCATTACAAGAATAATTTAGGGTGA 642 41.43 MDIEKKDELPLRSANPTTGDQKKLKRRRCIIICSSILAVILMIALILLILSLTVFKAKKPVLTVNSVALDDFDVNITPLPPKISLNLSLALDLTIKNPNKVGIKYQPSSAILRYKGRDVGDVPIPAGKIGADGIERLNLTVVLFADRLLTDSEIYRDVLGGNLPFSTYTRIKAKARVVFFNVHVTSTSTCDVNIDIGSRSISNQTCHYKNNLG 213
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu31g02166 213 Pfam Late embryogenesis abundant protein 93 190 IPR004864 -
Hetu31g02166 213 SUPERFAMILY LEA14-like 41 149 - -
Hetu31g02166 213 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 24 199 - -
Hetu31g02166 213 Gene3D - 48 194 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu31g02166 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
299538 Hetu31g02166 Hetu32g02171
300193 Hetu31g02166 Hetu33g02099
411755 Hetu1g00058 Hetu31g02166
415552 Hetu2g00121 Hetu31g02166
416251 Hetu31g02166 Hetu3g00059
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3353787 Hetu Hetu29g00873 Hetu-Chr29:48678879 Hetu31g02166 Hetu-Chr31:123660375
3360009 Hetu Hetu30g00759 Hetu-Chr30:41094592 Hetu31g02166 Hetu-Chr31:123660375
3364435 Hetu Hetu31g02166 Hetu-Chr31:123660375 Hetu32g02171 Hetu-Chr32:125777936
3456424 Hetu Hetu31g02165 Hetu-Chr31:123633890 Hetu31g02166 Hetu-Chr31:123660375