AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04286 ATGGATCTCGAAAAGAAAGACGAACAACCTCTCAGATCCGTTCCCTTCTCCGTCGCCGACGACCCATCCCGGAAACTCAAACGCCGGCGATGCATCATCTGTTGTTCATCGGTCGTCGGAGTTATACTCACCATCGGTTTAGTTATACTAATTTTAAGCCTCACTGTCTTCAAAGCAAAGAAGCCTGTTTTGACTGTCAATTCCGTACAGCTTCAAGACCTTGCTTTCTCCGTCAATCCAATTCCAGTTAGGGTTTCATTGAATCTCTCACTGGCTTTAGATATCTCCATTGATAACCCGAATAAGGTCAGTATCACTTACCAGAACAGCTCGGCGGTGCTCCGGTATAGAGGGAAAGACATCGGAAACGTCCCTGTACCGGCCGGAAAAATTGGTTCCGATGATACGTCGCGAGTGCATCTGACGCTTACAGTTTTTGCTGATCGGCTGGTTTCAGATTCAGAGATCTATGGAGATATTTTGAGTGGTAATTTGCCGTTTTCGACTTATACCAGAATCAAAGCTAGAGTTCGTGTTCTGTTTTTTCATATTCATGTTACGTCGACATCGACATGCGATGTGAATATAGATATTCAAAGCAGGAAGATCGCGAATCAAACTTGCCATTACAAGAATAAAATTTAG 645 43.88 MDLEKKDEQPLRSVPFSVADDPSRKLKRRRCIICCSSVVGVILTIGLVILILSLTVFKAKKPVLTVNSVQLQDLAFSVNPIPVRVSLNLSLALDISIDNPNKVSITYQNSSAVLRYRGKDIGNVPVPAGKIGSDDTSRVHLTLTVFADRLVSDSEIYGDILSGNLPFSTYTRIKARVRVLFFHIHVTSTSTCDVNIDIQSRKIANQTCHYKNKI 214
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04286 214 Gene3D - 48 199 - -
Stre1g04286 214 Pfam Late embryogenesis abundant protein 95 190 IPR004864 -
Stre1g04286 214 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 23 205 - -
Stre1g04286 214 SUPERFAMILY LEA14-like 54 152 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04286 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5190733 Stre Stre1g04273 Stre-Chr1:128681367 Stre1g04286 Stre-Chr1:128909246
5190743 Stre Stre1g04286 Stre-Chr1:128909246 Stre8g00211 Stre-Chr8:4346216
5228195 Stre Stre1g04286 Stre-Chr1:128909246 Stre6g01077 Stre-Chr6:50349784