AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02040 ATGGGGAGCACCGGAACATCATGGAAACTGTCGGATCACCCGAAGCTACCCAAAGGCAAGACCATCGCCGTCGTCGTTTTGGACGGTTGGGGCGAAGCTGCACCCGACCAATACAATTGCATTCATGTCGCCGAAACACCAACCATGGATTCCCTCAAAAACAGTGCTCCTGATCGGTGGAGATTGGTGAGGGCTCACGGTACTGCCGTGGGGCTTCCGACAGATGATGATATGGGGAACAGTGAAGTCGGACATAATGCTCTTGGTGCCGGAAGAATTTATGCTCAAGGTGCAAAACTGGTGGACCTTGCTCTGGCCTCTGGGAAAATATATGAAGATGAAGGTTTTAATTACATTAAGGAGTCTTTTGCGAACAACACCCTGCATCTCATTGGACTGTTGAGTGATGGAGGTGTGCATTCTCGTATGGATCAGTTACAGTTGTTGCTCAAAGGTGCTAGTGAGCGTGGTGCCAAGAGGATACGTGTTCATGTGCTTACTGATGGTCGTGATGTGGTAGATGGTTCAAGTGTCGGTTTTGCTGAAACGCTTGAAAAGGATCTAGCAGAGTTGCGTGGTAAAGGCATTGATGCACAGGTTGCCTCTGGTGGTGGCCGCATGTATGTCACCATGGATCGTTATGAGAACGACTGGGAAGTTGTGAAACGAGGATGGGATGCTCAGGTTCTTGGTGAAGCGCCACACAAGTTTAAGAATGTTGTTGAGGCAATAAAGAAGCTGAGGGAAGCACCCAATGCTAATGACCAATACTTACCACCATTTGTGATTGTTGATGACAGCGGGAATCCTGTGGGTCCCATAATGGACGGTGATGCTGTTGTCACATTCAACTTCAGAGCAGATCGTATGACAATGCTTGCACAAGCCCTTGAGTATGAAAAGTTTGATAAGTTTGACAGAGTGAGGTTCCCTAAAATTCGATATGCTGGAATGCTTCAATATGATGGGGAGTTGAAGCTTCCAAAACATTACCTTGTTTCTCCTCCGTTGATAGAGAGGACTTCTGGTGAATATCTAGTTAATAATGGTATTCGAACCTTTGCTTGCAGTGAAACAGTTAAATTTGGTCATGTTACATTCTTTTGGAACGGAAACCGTTCTGGATATTTTAATTCAGAGTTAGAGGAATATGTGGAAATTCCGAGTGATAGTGGAATTACCTTCAATGTCCAACCAAAGATGAAGGCTCTGGAGATTGGTGAGAAGGCCCGTGATGCGATTCTCAGTCGCAAATTTGACCAGGTAAGGGTGAATATACCAAATGGTGACATGGTTGGGCACACCGGTGACATTGAGGCTACAATTGTGGCTTGCAAAGCTGCTGATCAAGCTGTCAAGATGATTCTTGATGCAATAGAGCAAGTGGGTGGAATATATGTTGTGACTGCAGATCATGGTAATGCAGAAGACATGGTGAAGAGAAATAAGAAGGGAGAGCCTCTTGTTGACAAGGATGGAAAAGTTCAGATCCAAACCTCACACACTCTTCAACCTGTGCCCGTTGCCATTGGAGGTCCTGGATTAGCACCAGGTGTGAAATTCCGCAAGGATGTACCGAATGGTGGGCTAGCAAATGTAGCTGCAACAGTGATGAATCTGCATGGTTTTGTGGCTCCTGATGACTATGAGACAACCCTTATTGAAGTTGGGGATTAA 1677 45.92 MGSTGTSWKLSDHPKLPKGKTIAVVVLDGWGEAAPDQYNCIHVAETPTMDSLKNSAPDRWRLVRAHGTAVGLPTDDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEDEGFNYIKESFANNTLHLIGLLSDGGVHSRMDQLQLLLKGASERGAKRIRVHVLTDGRDVVDGSSVGFAETLEKDLAELRGKGIDAQVASGGGRMYVTMDRYENDWEVVKRGWDAQVLGEAPHKFKNVVEAIKKLREAPNANDQYLPPFVIVDDSGNPVGPIMDGDAVVTFNFRADRMTMLAQALEYEKFDKFDRVRFPKIRYAGMLQYDGELKLPKHYLVSPPLIERTSGEYLVNNGIRTFACSETVKFGHVTFFWNGNRSGYFNSELEEYVEIPSDSGITFNVQPKMKALEIGEKARDAILSRKFDQVRVNIPNGDMVGHTGDIEATIVACKAADQAVKMILDAIEQVGGIYVVTADHGNAEDMVKRNKKGEPLVDKDGKVQIQTSHTLQPVPVAIGGPGLAPGVKFRKDVPNGGLANVAATVMNLHGFVAPDDYETTLIEVGD 558
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02040 558 Gene3D Alkaline Phosphatase, subunit A 23 546 IPR017850 -
Fso1g02040 558 Pfam Metalloenzyme superfamily 20 543 IPR006124 GO:0003824(InterPro)|GO:0046872(InterPro)
Fso1g02040 558 CDD iPGM 20 554 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Fso1g02040 558 NCBIfam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 21 549 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Fso1g02040 558 SUPERFAMILY 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 96 331 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Fso1g02040 558 SUPERFAMILY Alkaline phosphatase-like 21 548 IPR017850 -
Fso1g02040 558 Gene3D - 96 340 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Fso1g02040 558 Pfam BPG-independent PGAM N-terminus (iPGM-N) 102 322 IPR011258 GO:0004619(InterPro)|GO:0005737(InterPro)|GO:0006007(InterPro)|GO:0030145(InterPro)
Fso1g02040 558 PIRSF IPGAM 15 556 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Fso1g02040 558 FunFam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 96 339 - -
Fso1g02040 558 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 8 555 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)|GO:0030145(PANTHER)|GO:0044262(PANTHER)|GO:0046537(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02040 K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
95683 Fso14g02502 Fso1g02040
96145 Fso1g02040 Fso5g02318
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2596738 Fso Fso14g02501 Fso-Chr14:59617052 Fso1g02040 Fso-Chr1:59596351
2596739 Fso Fso14g02502 Fso-Chr14:59623381 Fso1g02040 Fso-Chr1:59596351
2637654 Fso Fso1g02040 Fso-Chr1:59596351 Fso12g01894 Fso-Chr12:57328427
2652147 Fso Fso1g02040 Fso-Chr1:59596351 Fso5g02318 Fso-Chr5:63468760