AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00052 ATGGACATCGAAAAGAAAGAAGAACAGCCCCTCAGATCACCCGTACCCACCTCTGCACCATCCGACCCGACCCGCAAGCTCAAACGCCGTCGATGCATCATCATCTGCTCATCCATAACCGCTGTCATCCTCACCATCGCTCTAGTCCTCTTAATATTAGGCCTCACCGTTTTCAAAGCCAAAAAACCGGTTATAACCGTTAATTCCGTTGCCCTCGAAGACTTCGACGTCTCGGTTAACCCCATACCGATCCGGGTTTCATTAAACCTGTCACTGGCACTCGGTATAGCAATCAAAAACCCGAACAAGGTGAGTATTAAGTACCGGAGCAGCTCGGCGACTCTCCGGTATAGAAATAAAGATGTGGGGGATGTTCCTATACCCGCTGGACGGCTTGGGTCCGACGATACGGAGAATTTGAATTTGACTCTAACGGTTTTTGCTGATCGGTTGGTTTCGGATTCGGAGATTTATCGTGATGTTTTAAGAGGTAGTTTGCCGTTTTCGACTTATACTAGGATTAAGGCGAAGGTCCGCGTGCTTTTTGTTCATATTCGGGTTACCTCTACCTCTACTTGTGATTTTGATATTGATACACAGAATAGGAGTGTTGGGAATCAGACTTGTCATTACAAGAACAAGTTTTAG 648 46.45 MDIEKKEEQPLRSPVPTSAPSDPTRKLKRRRCIIICSSITAVILTIALVLLILGLTVFKAKKPVITVNSVALEDFDVSVNPIPIRVSLNLSLALGIAIKNPNKVSIKYRSSSATLRYRNKDVGDVPIPAGRLGSDDTENLNLTLTVFADRLVSDSEIYRDVLRGSLPFSTYTRIKAKVRVLFVHIRVTSTSTCDFDIDTQNRSVGNQTCHYKNKF 215
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00052 215 Pfam Late embryogenesis abundant protein 96 187 IPR004864 -
Hean1g00052 215 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 16 209 - -
Hean1g00052 215 Gene3D - 51 199 - -
Hean1g00052 215 SUPERFAMILY LEA14-like 44 153 - -
Hean1g00052 215 MobiDBLite consensus disorder prediction 1 24 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00052 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
100674 Hean10g00777 Hean1g00052
402275 Hean11g02575 Hean1g00052
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3207556 Hean Hean11g02575 Hean-Chr11:114398998 Hean1g00052 Hean-Chr1:1451342
3223551 Hean Hean16g01852 Hean-Chr16:88383519 Hean1g00052 Hean-Chr1:1451342
3280367 Hean Hean1g00052 Hean-Chr1:1451342 Hean10g00777 Hean-Chr10:31578451
3280482 Hean Hean1g00052 Hean-Chr1:1451342 Hean11g02573 Hean-Chr11:114193891