AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00054 ATGGCGGCAACCACCGGAACATCATGGAAACTGGCGGATCACCCGAAACTACCAAAAGGAAAGACCATCGCCGTCGTCGTTCTGGACGGTTGGGGTGAAGCTTCTCCCGACAAATACAATTGCATCCATGTCGCCGAAACTCCAACAATGGATTCCCTAAAAACCACTGCTCCTGATCGGTGGAGACTGGTGAGGGCACATGGTACTGCCGTGGGGCTTCCCACAGAGGATGATATGGGGAATAGTGAAGTTGGACACAATGCTCTTGGTGCTGGAAGAATTTTTGCTCAAGGGGCAAAACTTGTAGATCTTGCTCTTGCCTCTGGAAAAATATATGAAGATGAAGGTTTCAGTTACATCAAGGAATCTTTCGCCAACAACACTCTACACCTTATTGGATTAATGAGTGATGGCGGTGTGCACTCTCGCCTGGATCAATTACAGTTGTTGCTCAAAGGTGCTAGTGAACGTGGTGCCAAGAGGATACGCGTTCATGTACTGACTGATGGTCGTGATGTCGTAGATGGTACAAGTGTCGCTTTTGCTGAAACGCTTGAAAAAGATCTAGCTGAGTTACGTGGTAAAGGCATTGATGCACAAGTTGCTTCTGGTGGAGGCCGCATGTATGTCACCATGGATCGTTATGAGAACGACTGGGAAGTTGTGAAACGCGGTTGGGACGCTCAAGTTCTCGGTGAAGCGCCGCACAAGTTTAAAAACGTTGTTGAGGGAATCAAGAAGCTGAGGGAAGCACCGAATGCTAACGACCAATACTTACCACCGTTTGTGATTGTTGATGATAACGGGAAGCCTGTGGGTCCCATAATGGATGGTGATGCTGTTGTGACATTCAACTTTAGAGCAGATCGTATGACGATGCTTGCACAAGCCCTCGAGTATGAAAAGTTTGATAAATTTGACAGAGTGCGGTTCCCCAAAATCCGCTACGCTGGAATGCTTCAATATGATGGCGAGTTGAAGCTTCCAAATCATTACCTTGTTTCTCCTCCGTTGATCGAGAGGACTTCTGGTGAATATCTAGTTAATAACGGTATCCGTACCTTTGCCTGCAGTGAAACGGTCAAATTTGGTCATGTTACATTTTTCTGGAATGGGAACCGTTCCGGGTATTTTAACAAAGAGTTGGAGGAATACGTGGAAATTCCAAGTGATAGTGGAATTACGTTCAATGTCCAACCGAAGATGAAGGCTCTCGAGATTGGTGAGAAGGCCCGTGATGCCATACTCAGTCGCAAGTTTGACCAGATAAGGGTGAATATACCAAATGGTGACATGGTTGGGCATACTGGTGACATCGAGGCTACAGTTGTGGCCTGCAAAGCTGCTGATCAAGCTGTTAAGATGATTCTTGACGCAATAGAGCAAGTGGGTGGAATATACGTGGTGACTGCCGATCATGGTAATGCAGAAGACATGGTGAAGAGAAATAAGAAAGGCGAGCCGCTTGTTGACAAGGATGGCAAAGTTCAGATCCAAACCTCACACACTGTACAACCGGTGCCGGTTGCAATTGGAGGTCCTGGATTAGCAGCAGGTGTGAAATTCCGCAAGGATGTACCGAATGGTGGGCTGGCTAATGTAGCAGCAACGGTGATGAATCTGCATGGGTTTGTGGCTCCTGATGACTATGAGACAACCCTTATAGAAGTGGATTAA 1677 46.93 MAATTGTSWKLADHPKLPKGKTIAVVVLDGWGEASPDKYNCIHVAETPTMDSLKTTAPDRWRLVRAHGTAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYEDEGFSYIKESFANNTLHLIGLMSDGGVHSRLDQLQLLLKGASERGAKRIRVHVLTDGRDVVDGTSVAFAETLEKDLAELRGKGIDAQVASGGGRMYVTMDRYENDWEVVKRGWDAQVLGEAPHKFKNVVEGIKKLREAPNANDQYLPPFVIVDDNGKPVGPIMDGDAVVTFNFRADRMTMLAQALEYEKFDKFDRVRFPKIRYAGMLQYDGELKLPNHYLVSPPLIERTSGEYLVNNGIRTFACSETVKFGHVTFFWNGNRSGYFNKELEEYVEIPSDSGITFNVQPKMKALEIGEKARDAILSRKFDQIRVNIPNGDMVGHTGDIEATVVACKAADQAVKMILDAIEQVGGIYVVTADHGNAEDMVKRNKKGEPLVDKDGKVQIQTSHTVQPVPVAIGGPGLAAGVKFRKDVPNGGLANVAATVMNLHGFVAPDDYETTLIEVD 558
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00054 558 PIRSF IPGAM 16 558 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Hean1g00054 558 Pfam Metalloenzyme superfamily 21 544 IPR006124 GO:0003824(InterPro)|GO:0046872(InterPro)
Hean1g00054 558 Gene3D Alkaline Phosphatase, subunit A 24 547 IPR017850 -
Hean1g00054 558 SUPERFAMILY Alkaline phosphatase-like 22 549 IPR017850 -
Hean1g00054 558 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 9 556 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)|GO:0030145(PANTHER)|GO:0044262(PANTHER)|GO:0046537(PANTHER)
Hean1g00054 558 SUPERFAMILY 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 97 332 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Hean1g00054 558 FunFam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 97 340 - -
Hean1g00054 558 Pfam BPG-independent PGAM N-terminus (iPGM-N) 103 323 IPR011258 GO:0004619(InterPro)|GO:0005737(InterPro)|GO:0006007(InterPro)|GO:0030145(InterPro)
Hean1g00054 558 Gene3D - 97 341 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Hean1g00054 558 NCBIfam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 22 550 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Hean1g00054 558 CDD iPGM 21 555 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00054 K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
100673 Hean10g00776 Hean1g00054
402276 Hean11g02578 Hean1g00054
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3207223 Hean Hean11g02155 Hean-Chr11:77796575 Hean1g00054 Hean-Chr1:1458135
3227475 Hean Hean17g02515 Hean-Chr17:75912296 Hean1g00054 Hean-Chr1:1458135
3228957 Hean Hean1g00054 Hean-Chr1:1458135 Hean6g01856 Hean-Chr6:47478227
3280368 Hean Hean1g00054 Hean-Chr1:1458135 Hean10g00776 Hean-Chr10:31560939
3280483 Hean Hean1g00054 Hean-Chr1:1458135 Hean11g02578 Hean-Chr11:114555063
3280966 Hean Hean1g00054 Hean-Chr1:1458135 Hean15g00129 Hean-Chr15:2197051