AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso1g03573 | ATGGACATCGAAAAGAAAGAAGAACAGCCTCTGCGATCCGTCGTCGACGATCCATCACGGAAGCGCAAACGCCGGAGATGCATCATCTGTTGGTCATCCGTGATCGGAGTCATACTCACCATTGCTTTAATCATACTCATTTTAAGCCTCACCGTCTTCAAAGCGAAGAAGCCGGTCATGACTGTCAATTCCGTATCGCTTGAAGATTTAAATTTCTCTCTCAATCCGATTCCGGCTGGGGTTTCACTGAACCTTTCGCTTGCCCTGGATATCTCAATCGAGAACCCTAACAAGGTGAGCATCAAGTACCGGACCAGCTCAGCCTCTCTCCGGTACAGAGGCAAAGAGGTCGGTAACGTTCCGATTCCCGCCGGAAAACTCGGATCTGATGATAAGACGCAATTGAATCTGACGCTAACTGTTTTCGCCGATCGGCTGGTTTCCGATTCCGATCTCTACCGGGATCTGGTCGGAGGTAATTTGCCGTTTACGACTTATACGAGAATTAAGGCGAAAGTTAAGGTTCTTTTCGTCAATATTCATGTGACATCGACCTCGACCTGTGATGTGAATATTGATGTACAGAGTAGAAGCATCCCGGATCAGAATTGCCGTTACAAGAACAAGATTTAG | 633 | 47.24 | MDIEKKEEQPLRSVVDDPSRKRKRRRCIICWSSVIGVILTIALIILILSLTVFKAKKPVMTVNSVSLEDLNFSLNPIPAGVSLNLSLALDISIENPNKVSIKYRTSSASLRYRGKEVGNVPIPAGKLGSDDKTQLNLTLTVFADRLVSDSDLYRDLVGGNLPFTTYTRIKAKVKVLFVNIHVTSTSTCDVNIDVQSRSIPDQNCRYKNKI | 210 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso1g03573 | 210 | Gene3D | - | 45 | 193 | - | - | |
| Smso1g03573 | 210 | PANTHER | LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY | 18 | 197 | - | - | |
| Smso1g03573 | 210 | Pfam | Late embryogenesis abundant protein | 91 | 183 | IPR004864 | - | |
| Smso1g03573 | 210 | SUPERFAMILY | LEA14-like | 44 | 165 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso1g03573 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 147328 | Smso17g00131 | Smso1g03573 | |
| 149172 | Smso1g03573 | Smso8g00139 | |
| 337971 | Smso28g00516 | Smso1g03573 | |
| 346426 | Smso20g01806 | Smso1g03573 | |
| 357516 | Smso1g03573 | Smso28g00516 | |
| 429024 | Smso1g03573 | Smso20g01806 | |
| 429025 | Smso1g03573 | Smso28g00516 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 4967721 | Smso | Smso1g03573 | Smso-Chr1:120793902 | Smso29g01151 | Smso-Chr29:23445885 | |
| 5024257 | Smso | Smso1g03573 | Smso-Chr1:120793902 | Smso17g00131 | Smso-Chr17:1435237 | |
| 5025338 | Smso | Smso1g03573 | Smso-Chr1:120793902 | Smso20g01806 | Smso-Chr20:61247978 | |
| 5027943 | Smso | Smso1g03573 | Smso-Chr1:120793902 | Smso28g00516 | Smso-Chr28:14410605 | |
| 5028289 | Smso | Smso1g03573 | Smso-Chr1:120793902 | Smso29g01575 | Smso-Chr29:42787553 | |
| 5029660 | Smso | Smso1g03573 | Smso-Chr1:120793902 | Smso8g00139 | Smso-Chr8:1839954 |