AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial22g00864 ATGGACGTCGAAAAGCGATCCACCTCCGTCGATCCTCACCGGCGGAAACTGATCATCATCTGGTCATCCATCACCGGAGCCATCCTCACCATCGCCTTACTCCTCCTCATCCTCGGCCTCACCGTCTACAAACCCAAGAAGCCAATCCTCACCCTCAACTCCCTCCACCTCCAAGACCTCCACGTCTCCCTCATCCCACCGCTCTCACTCAACCTCTCACTCGCCCTCAACATCACCATCACCAACCCCAACAAGGTCACCATCAACTACCAATCCAGCTCTGCAACGCTCCGGTATAAAAACAACGACGTGGGTAATGTTCCGTTTCCGGATGGAAGGATCGGTGCGGATGGTTCGGCGGATTTGAACCTCACGTTGACTGTTTTCGCGGATCGGTTGGTCTCGGATTCGGATGTTTATGGGGATGTTGTTGCGGGGAATGTCCCGTTTTCGACTTATACTCGGGTTAAGGCTAAGGTGAGGGTTCTGTTTTTTTATATTCATGTCACGTCCACGTCCACGTGTGATGTTAATGTCAATGTGGTGTCGCAAACCGTTGTGAATCAGACGTGCTATTACAAGAATAAGATTTAG 594 51.35 MDVEKRSTSVDPHRRKLIIIWSSITGAILTIALLLLILGLTVYKPKKPILTLNSLHLQDLHVSLIPPLSLNLSLALNITITNPNKVTINYQSSSATLRYKNNDVGNVPFPDGRIGADGSADLNLTLTVFADRLVSDSDVYGDVVAGNVPFSTYTRVKAKVRVLFFYIHVTSTSTCDVNVNVVSQTVVNQTCYYKNKI 197
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial22g00864 197 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 24 191 - -
Bial22g00864 197 Pfam Late embryogenesis abundant protein 78 170 IPR004864 -
Bial22g00864 197 SUPERFAMILY LEA14-like 31 135 - -
Bial22g00864 197 Gene3D - 38 180 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial22g00864 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
28286 Bial17g00048 Bial22g00864
31788 Bial22g00864 Bial5g01136
182220 Bial10g01272 Bial22g00864
363604 Bial12g02718 Bial22g00864
374162 Bial22g00864 Bial24g02561
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
707286 Bial Bial22g00864 Bial-Chr22:8276713 Bial3g02406 Bial-Chr3:68598531
782155 Bial Bial10g01272 Bial-Chr10:12713346 Bial22g00864 Bial-Chr22:8276713
793153 Bial Bial12g02718 Bial-Chr12:57369239 Bial22g00864 Bial-Chr22:8276713
817877 Bial Bial17g00048 Bial-Chr17:2139540 Bial22g00864 Bial-Chr22:8276713
840016 Bial Bial22g00864 Bial-Chr22:8276713 Bial24g02561 Bial-Chr24:56473433
840458 Bial Bial22g00864 Bial-Chr22:8276713 Bial5g01136 Bial-Chr5:16278882