AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu31g02168 ATGGCAACCTCCGGAACGACATGGAAACTGGCCGATCACCCGAAACTACCGAAAGGAAAGATCATCGCCGTCGTCGTCTTGGACGGTTGGGGTGAAGCTTCACCGGACAAATACAATTGCATCCATGTTGCCGAGACACCAATGATGGATTCTTTAAAAAACAGTGCCCCCGATCGGTGGAGATTGGTGAAGGCTCATGGTAAGGCCGTCGGGCTTCCAACTGATGATGACATGGGGAACAGTGAAGTCGGGCATAATGCTCTTGGTGCCGGACGAATTTTTGCTCAAGGTGCAAAACTTGTTGATAATGCTCTTGCCTCTGGAAAAATTTACGAAGACGAAGGTTTCAATTACATCAAAGAATCTTTCGCAAATAACACCTTGCACCTTATTGGATTGATGAGTGATGGGGGCGTGCACTCGCGCCTTGATCAGTTACAGTTGCTGCTCAAAGGTGCTAGTGAACGCGGTGCCAAGAGGATACGTGTTCATGTACTTACTGATGGCCGTGATGTTGTGGATGGTTCAAGCGTTGGCTTTGCAGAAACACTTGAAAAGGATCTTGCAGAGCTACGTGGTAAAGGCATTGATGCGCAGGTTGCTTCGGGTGGAGGTCGCATGTTTGTCACCATGGACCGTTATGAGGTAACTCAATTTGAACTCTTGCTGTTACATTTGCAGAACGACTGGGAAGTTGTGAAACGCGGTTGGGATGCACAGGTACTCGGTGAAGCCCCACACAAATTCACAAGTGTAGTTGAGGCTATCAAGAAGCTGAGGGAAGCTCCTAATGCTAATGACCAATACTTACCACCGTTCGTGATTGTTGACGAAAGCGGGAAGCCTGTTGGTCCCATAAACGACGGTGATGCTGTTGTCACGGTCAACTTCAGAGCTGATCGTATGACAATGCTTGCACAAGCTCTCGAGTACGAGAAGTTTGATAAATTTGATAGAGTGAGGTTCCCCAAAATCCGCTATGCGGGAATGCTGCAGTATGATGGGGACTTGAAGCTTCCAAATCATTACCTTGTCTCTCCTCCATTGATAGAGAGGACTTCTGGTGAATATTTAGTTAATAACGGTATCCGCACCTTTGCTTGCAGTGAAACAGTCAAATTTGGCCATGTTACATTTTTCTGGAACGGGAACCGATCGGGATATTTTAATTCGGAGTTAGAGAAATATGTGGAAATTCCAAGCGATAGTGGAATAACATTTAATGTCCAACCGAAGATGAAGGCTTTGGAGATTGGTGAGAAGGCCCGAGACGCCATTCTCAGTCGCAATTATGACCAGGTAAGAGTGAATATACCAAATGGTGACATGGTTGGGCATACTGGTGACATTGAGGCTACTGTTGTGGCCTGCAAGGCTGCTGATCAGGCTGTTAAGATGATCCTTGATGCAATAGCGGAAGTTGGTGGAATATATGTGGTGACCGCAGATCATGGTAATGCAGAAGACATGGTGAAGAGAGACAAGAAGGGGGAGCCTCTTGTTGGCAAGGATGGCAAAGTTCAGATCCAAACTTCTCACACTCTTCAACCGGTGCCTGTTGCAATTGGAGGCCCCGGATTAGCAGGAGGTGTGAAATACCGCAAGGATGTACCAAATGGCGGACTAGCAAATGTAGCTGCAACGGTGATTAATCTACATGGGTTTGTGGCTCCTGATGACTACGAGACAACGCTTATCGAAGTTGTTGATTAA 1713 46.88 MATSGTTWKLADHPKLPKGKIIAVVVLDGWGEASPDKYNCIHVAETPMMDSLKNSAPDRWRLVKAHGKAVGLPTDDDMGNSEVGHNALGAGRIFAQGAKLVDNALASGKIYEDEGFNYIKESFANNTLHLIGLMSDGGVHSRLDQLQLLLKGASERGAKRIRVHVLTDGRDVVDGSSVGFAETLEKDLAELRGKGIDAQVASGGGRMFVTMDRYEVTQFELLLLHLQNDWEVVKRGWDAQVLGEAPHKFTSVVEAIKKLREAPNANDQYLPPFVIVDESGKPVGPINDGDAVVTVNFRADRMTMLAQALEYEKFDKFDRVRFPKIRYAGMLQYDGDLKLPNHYLVSPPLIERTSGEYLVNNGIRTFACSETVKFGHVTFFWNGNRSGYFNSELEKYVEIPSDSGITFNVQPKMKALEIGEKARDAILSRNYDQVRVNIPNGDMVGHTGDIEATVVACKAADQAVKMILDAIAEVGGIYVVTADHGNAEDMVKRDKKGEPLVGKDGKVQIQTSHTLQPVPVAIGGPGLAGGVKYRKDVPNGGLANVAATVINLHGFVAPDDYETTLIEVVD 570
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu31g02168 570 Pfam BPG-independent PGAM N-terminus (iPGM-N) 101 334 IPR011258 GO:0004619(InterPro)|GO:0005737(InterPro)|GO:0006007(InterPro)|GO:0030145(InterPro)
Hetu31g02168 570 Pfam Metalloenzyme superfamily 22 555 IPR006124 GO:0003824(InterPro)|GO:0046872(InterPro)
Hetu31g02168 570 FunFam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 96 351 - -
Hetu31g02168 570 NCBIfam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 22 561 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Hetu31g02168 570 Gene3D - 96 352 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Hetu31g02168 570 SUPERFAMILY 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 96 343 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Hetu31g02168 570 CDD iPGM 22 566 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Hetu31g02168 570 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 8 567 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)|GO:0030145(PANTHER)|GO:0044262(PANTHER)|GO:0046537(PANTHER)
Hetu31g02168 570 SUPERFAMILY Alkaline phosphatase-like 22 560 IPR017850 -
Hetu31g02168 570 PIRSF IPGAM 16 569 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Hetu31g02168 570 Gene3D Alkaline Phosphatase, subunit A 23 558 IPR017850 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu31g02168 K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
299539 Hetu31g02168 Hetu32g02172
300194 Hetu31g02168 Hetu33g02101
411757 Hetu1g00060 Hetu31g02168
415554 Hetu2g00123 Hetu31g02168
416252 Hetu31g02168 Hetu3g00061
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3360008 Hetu Hetu30g00758 Hetu-Chr30:41085932 Hetu31g02168 Hetu-Chr31:123723693
3364436 Hetu Hetu31g02168 Hetu-Chr31:123723693 Hetu43g02841 Hetu-Chr43:165754613
3531802 Hetu Hetu1g00060 Hetu-Chr1:2846792 Hetu31g02168 Hetu-Chr31:123723693
3580653 Hetu Hetu2g00123 Hetu-Chr2:3880110 Hetu31g02168 Hetu-Chr31:123723693
3580671 Hetu Hetu2g00045 Hetu-Chr2:1465843 Hetu31g02168 Hetu-Chr31:123723693
3614327 Hetu Hetu28g00710 Hetu-Chr28:38675729 Hetu31g02168 Hetu-Chr31:123723693
3618317 Hetu Hetu29g00872 Hetu-Chr29:48672283 Hetu31g02168 Hetu-Chr31:123723693
3620030 Hetu Hetu3g00061 Hetu-Chr3:2898294 Hetu31g02168 Hetu-Chr31:123723693
3623710 Hetu Hetu31g02168 Hetu-Chr31:123723693 Hetu32g02172 Hetu-Chr32:125949735
3625253 Hetu Hetu31g02168 Hetu-Chr31:123723693 Hetu33g02101 Hetu-Chr33:118345884