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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi31g02041 ATGGATATCGAAAATAAAGACGAACAACCTCTCCGATCTCCGGCAGCCACCGCCGGCGACCCGTCACGTCACCGAAAACGCCGGCGATGCATCATAATCTCCTCATCAATACTCGCAACAATACTCACCATTACCTTAATAATAATAATATTAGCCTTCACCGTCTTCAAAGCCAAAAAGCCAGTCATCTCCGTCAATTCCGTCGCTCTTCAGAATTTCGACTTTTCCATTAACCCTCTTCCACTTAGGGTTTCATTAAACCTCTCACTCGCCCTCGGAATTTCAATTAAAAACCCTAACAAAGTCAGTATCAAGTACGGCAACAGCTCCGCCGCTCTCCGGTACAAAGGCCGTGACGTCGGCAATGTTCCGGTTCCCGCCGGTAAACTTGGTTCCGATGATACGGAGCGGTTGAATCTAACGGTTAATATTTTTGCTGATCGGATAGTTGCGGATCCGGAGATCTATTCGGATATTATTGGGGGTAGTTTGGTCATAACGACTTATACGAGAATTAAAGCTAGGGTTAGAGTGGTTTTGTTTAATATTCATGTCACGTCTACTTCAAGTTGTGATGTGAATATTAATGTTGGAAATAGAAGTGTTTCGGATCAAAGTTGTCATTACAAGAACAAGTTAGAGTGA 645 43.72 MDIENKDEQPLRSPAATAGDPSRHRKRRRCIIISSSILATILTITLIIIILAFTVFKAKKPVISVNSVALQNFDFSINPLPLRVSLNLSLALGISIKNPNKVSIKYGNSSAALRYKGRDVGNVPVPAGKLGSDDTERLNLTVNIFADRIVADPEIYSDIIGGSLVITTYTRIKARVRVVLFNIHVTSTSSCDVNINVGNRSVSDQSCHYKNKLE 214
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi31g02041 214 Pfam Late embryogenesis abundant protein 94 190 IPR004864 -
Dapi31g02041 214 Gene3D - 46 196 - -
Dapi31g02041 214 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 18 198 - -
Dapi31g02041 214 SUPERFAMILY LEA14-like 45 150 - -
Dapi31g02041 214 MobiDBLite consensus disorder prediction 1 22 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi31g02041 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
80503 Dapi27g00142 Dapi31g02041
249064 Dapi31g02041 Dapi4g01827
385563 Dapi20g01764 Dapi31g02041
390172 Dapi31g02041 Dapi4g01827
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1936369 Dapi Dapi31g02041 Dapi-Chr31:100997686 Dapi4g01827 Dapi-Chr4:115068970
1986842 Dapi Dapi11g00142 Dapi-Chr11:2423469 Dapi31g02041 Dapi-Chr31:100997686
2024853 Dapi Dapi20g01764 Dapi-Chr20:106370042 Dapi31g02041 Dapi-Chr31:100997686
2045285 Dapi Dapi27g00142 Dapi-Chr27:2688522 Dapi31g02041 Dapi-Chr31:100997686
2049497 Dapi Dapi31g02041 Dapi-Chr31:100997686 Dapi4g01825 Dapi-Chr4:115049619