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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dapi4g01830 ATGGTTGGGCATACCGGTGACATTGAGGCTACCGTTGTGGCGTGCAAAGCCGTTGTTAAGATGATTCTTGATGCAATAGCAGAAGATATGGTTAAGATAAATAAGGAAGGGGAGCCTATTATTGACAAAGATGGCAAAGTTCAGATCCAAACCTCACACACTCTTAAACCAGTGCCGGTTGCAATCGGAGGTCCTGGATTAGCAGGAGGTGTGAGATTCCGCAAGGATGTATCGAATGGTGGGCTAGCAAACGTCGCAGCAACGGTGATGAATCTGCACGGTTGCGTGGCTCCTGATTACTATGAGACATCCCTTATTGAAGTTGTGGATTAA 333 46.55 MVGHTGDIEATVVACKAVVKMILDAIAEDMVKINKEGEPIIDKDGKVQIQTSHTLKPVPVAIGGPGLAGGVRFRKDVSNGGLANVAATVMNLHGCVAPDYYETSLIEVVD 110
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dapi4g01830 110 Gene3D Alkaline Phosphatase, subunit A 24 110 IPR017850 -
Dapi4g01830 110 Pfam Metalloenzyme superfamily 1 94 IPR006124 GO:0003824(InterPro)|GO:0046872(InterPro)
Dapi4g01830 110 SUPERFAMILY Alkaline phosphatase-like 1 107 IPR017850 -
Dapi4g01830 110 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 1 107 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)|GO:0030145(PANTHER)|GO:0044262(PANTHER)|GO:0046537(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dapi4g01830 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
73022 Dapi11g00144 Dapi4g01830
80507 Dapi27g00144 Dapi4g01830
249065 Dapi31g02042 Dapi4g01830
390173 Dapi31g02042 Dapi4g01830
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1912614 Dapi Dapi20g01766 Dapi-Chr20:106390780 Dapi4g01830 Dapi-Chr4:115122766
1941184 Dapi Dapi4g01830 Dapi-Chr4:115122766 Dapi4g01832 Dapi-Chr4:115178469
1958559 Dapi Dapi4g01829 Dapi-Chr4:115079691 Dapi4g01830 Dapi-Chr4:115122766
1958560 Dapi Dapi4g01830 Dapi-Chr4:115122766 Dapi4g01831 Dapi-Chr4:115151526