AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial24g02561 ATGGACATCGAGAAGAAAGAAGAACAACCACTCCGATCAACCCCCACCACCACCACCGTCAGCCACCACACCAAACCAATTCGCCGGCGCCGCTGCATAATAATCTGCTCATCAATACTCGCAGCCATCCTCACCATTACCATAATAATAATAATCCTAGCCTTCACCGTCTTCAAAGCCAAAAAGCCAGTCATCTCCGTCACCTCCGTCGCACTACAGGACTTCGACGTCTCCGTCGTTCCGATTCCACCAAGCGTAACACTAAACGTCTCACTCGCACTCGGCATCTCAATCCAAAACCCTAACAAAGTATCCATCAAGTACCGTAACAGCTCGGCTACTCTCCGGTACAAAGGCCGTGACATCGGTGACGTGCCCATACCCGCCGGAAGACTTGGATCCGATGACACCGAGCGGTTGAACCTGACGGTTACTATATTTGCGGATCGGGTCGTGATGGACCCGCAGATCTATTCGGATATTATTGGAGGTGTGTTGCCGATTTCGACTTATACGAAAATTAAAGCGAAAGTGCGTGTGGTGGTGTTTAATATTCATGTCACGTCTACGTCTAGTTGTGATATTAATATTGATGTGAGAACTAGAAGTATTGCTAATGAGACTTGTCGCTACAAGAACAAGTTATAG 648 47.84 MDIEKKEEQPLRSTPTTTTVSHHTKPIRRRRCIIICSSILAAILTITIIIIILAFTVFKAKKPVISVTSVALQDFDVSVVPIPPSVTLNVSLALGISIQNPNKVSIKYRNSSATLRYKGRDIGDVPIPAGRLGSDDTERLNLTVTIFADRVVMDPQIYSDIIGGVLPISTYTKIKAKVRVVVFNIHVTSTSSCDINIDVRTRSIANETCRYKNKL 215
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial24g02561 215 MobiDBLite consensus disorder prediction 1 23 - -
Bial24g02561 215 Pfam Late embryogenesis abundant protein 96 192 IPR004864 -
Bial24g02561 215 SUPERFAMILY LEA14-like 49 152 - -
Bial24g02561 215 Gene3D - 48 198 - -
Bial24g02561 215 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 21 205 - -
Bial24g02561 215 SMART why 75 195 IPR013990 GO:0009269(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial24g02561 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
28287 Bial17g00048 Bial24g02561
32207 Bial24g02561 Bial5g01136
184885 Bial12g02718 Bial24g02561
361535 Bial10g01272 Bial24g02561
363605 Bial12g02718 Bial24g02561
374162 Bial22g00864 Bial24g02561
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
687036 Bial Bial15g02719 Bial-Chr15:74542162 Bial24g02561 Bial-Chr24:56473433
713593 Bial Bial24g02561 Bial-Chr24:56473433 Bial3g02406 Bial-Chr3:68598531
782951 Bial Bial10g01272 Bial-Chr10:12713346 Bial24g02561 Bial-Chr24:56473433
794740 Bial Bial12g02718 Bial-Chr12:57369239 Bial24g02561 Bial-Chr24:56473433
818170 Bial Bial17g00048 Bial-Chr17:2139540 Bial24g02561 Bial-Chr24:56473433
840016 Bial Bial22g00864 Bial-Chr22:8276713 Bial24g02561 Bial-Chr24:56473433
843431 Bial Bial24g02561 Bial-Chr24:56473433 Bial5g01136 Bial-Chr5:16278882