AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Smso28g00516 | ATGGACATCGAAAAGAAAGACGAACAGCCTCTCCGATCCGTCGCCGTCCCCGTCGCCGTCTCCGACGATCAATCACGGAAGCGCAAACGCCGGAGATGCATCATCTGTTGGTCATCTGTGATCGGAGTCATACTCACCATTGCTTTAATCATACTCATTTTAAGCCTCACCGTATTCAAAGCGAAGAAGCCGGTGATGACTGTCAATTCCGTTTCGCTTGAAGATTTGAATTTCTCTATCAATCCGATTCCGGCTAGTGTTTCACTGAACCTTTCGCTTGCCCTAGATATCTCAATTGAGAACCCTAACAAGGTCAGCATCAAGTACCGGACCAGCTCAGCCTCTCTCCGGTACAGAGGAAAAGAGGTCGGTAACGTTCCGATTCCCGCCGGAAAACTCGGATCTGATGATAAGACGCAGTTGAATCTGACGCTAACTGTTTTCGCCGATCGGCTGGTTTCCGATTCCGATCTGTACCGGGATCTGGTCGGAGGTAATTTGCCGTTTACGACTTATACGAGAATTAAGGCGAAAGTTAGGGTTCTTTTCGTGAATATTCATGTGACGTCGACGTCGACCTGTGATGTGAATATTGATGTGCAGAGTAGAAGCATCCCGGATCAGAATTGCCGTTACAAGAATAAGATTTAG | 651 | 47.62 | MDIEKKDEQPLRSVAVPVAVSDDQSRKRKRRRCIICWSSVIGVILTIALIILILSLTVFKAKKPVMTVNSVSLEDLNFSINPIPASVSLNLSLALDISIENPNKVSIKYRTSSASLRYRGKEVGNVPIPAGKLGSDDKTQLNLTLTVFADRLVSDSDLYRDLVGGNLPFTTYTRIKAKVRVLFVNIHVTSTSTCDVNIDVQSRSIPDQNCRYKNKI | 216 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Smso28g00516 | 216 | PANTHER | LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY | 24 | 203 | - | - | |
| Smso28g00516 | 216 | Gene3D | - | 51 | 199 | - | - | |
| Smso28g00516 | 216 | SUPERFAMILY | LEA14-like | 51 | 173 | - | - | |
| Smso28g00516 | 216 | Pfam | Late embryogenesis abundant protein | 97 | 189 | IPR004864 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Smso28g00516 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 147329 | Smso17g00131 | Smso28g00516 | |
| 153318 | Smso28g00516 | Smso8g00139 | |
| 337971 | Smso28g00516 | Smso1g03573 | |
| 357516 | Smso1g03573 | Smso28g00516 | |
| 429025 | Smso1g03573 | Smso28g00516 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 4984994 | Smso | Smso28g00516 | Smso-Chr28:14410605 | Smso29g01151 | Smso-Chr29:23445885 | |
| 5027943 | Smso | Smso1g03573 | Smso-Chr1:120793902 | Smso28g00516 | Smso-Chr28:14410605 | |
| 5065545 | Smso | Smso17g00131 | Smso-Chr17:1435237 | Smso28g00516 | Smso-Chr28:14410605 | |
| 5078001 | Smso | Smso20g01806 | Smso-Chr20:61247978 | Smso28g00516 | Smso-Chr28:14410605 | |
| 5096039 | Smso | Smso28g00516 | Smso-Chr28:14410605 | Smso29g01575 | Smso-Chr29:42787553 | |
| 5096374 | Smso | Smso28g00516 | Smso-Chr28:14410605 | Smso8g00139 | Smso-Chr8:1839954 |