AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cobi6g01045 ATGGCAACGAATTGGAAACTGGCCGATCACCCGAAACTACCGAAAGGAAAGACAATTGCCGTCGTGGTTTTGGACGGTTGGGGTGAGGCTTCACCTAACCAATACAATTGCATCCATGTCGCCGAGACGCCTACGATGGATTCTCTCAAAAATACTGCCCCTGATTGGTGGAGATTGGTGAAGGCTCATGGTAAGGCCGTGGGGCTCCCCACAGACGATGACATGGGGAACAGTGAAGTCGGGCATAATGCTCTTGGTGCCGGACGAATTTTTGCTCAAGGTGCAAAACTTGTTGATAATGCTCTTGCATCTGGAAAAATTTATGAAGATGAAGGTTTTAATTACATTAAGGAATCTTTTGCAAATAACACTTTGCACCTTATTGGATTGATGAGTGACGGGGGTGTGCACTCACGTCTTGATCAGTTACAGTTACTGCTCAAAGGTGCTAGTGAACGCGGTGCCAAGAGGATACGCGTTCATGTACTTACTGATGGCCGTGATGTTGTGGACGGAACAAGTGTCGATTTTGCAGAAACACTTGAAAAGGATCTTGCAGAGCTTCGTGGTAAAGGCATTGATGCACAGATTGCTTCTGGTGGGGGACGCATGTATGTCACCTTGGACCGTTATGAGAACGACTGGGAAGTTGTGAAACGCGGTTGGGACGCTCAGGTTCTCGGCGAAGCCCCACACAAATTTAAAAATGCTGTTGAGGCCATCAAGAAGCTAAGGGAAGCTCCCAATGCTAATGACCAATACTTACCACCATTTGTGATTGTCGATGATAGCGGGAAGCCTGTTGGGCCCGTAAACGATGGTGATGCAGTTGTCACATTTAACTTCCGAGCTGATCGTATGACAATGCTTGCACAAGCTCTCGAGTATGAAAAGTTTGATAAGTTTGACCGAGTTCGGTTCCCTAAAATCCGCTATGCGGGAATGCTTCAATATGATGGCGAGTTGAAGCTTCCAAATCATTATCTTGTTTCGCCTCCATTGATCGAGAGGACTTCGGGTGAATATTTGGTTAAAAACGGGATCCGCACCTTTGCTTGCAGTGAAACGGTCAAATTCGGTCATGTCACATTTTTCTGGAACGGGAACCGCTCTGGATATTTTAATGGAGAGTTAGAGAAATATGTGGAAATTCCAAGTGATAGTGGAATTACATTCAATGTTCAACCAAAAATGAAGGCTTTGGAGATTGGTGAGAAGGCCAAAGAAGCCATTCTTAGCCGCAAATATGACCAGATAAGAGTGAATATACCAAATGGAGACATGGTTGGGCATACTGGTGACATTGAGGCTACAGTTGTGGCCTGCAAGGCTGCTGATGAAGCTGTTAAGATGATTCTTGATGCAGTAGAACAAGTGGGTGGAATATATGTGGTAACTGCAGATCATGGTAATGCAGAAGACATGGTGAAAAGAGACAAGAAGGGAGAGCCTATTGTTGGCAAGGATGGCAAAGTTCAAATCCAAACCTCTCACACTCTTCAACCGGTGCCGGTTGCAATTGGAGGCCCAGGATTATCGAAAGGTGTGAAGTACCGGAAGGATGTCCCGGATGGTGGACTAGCAAATGTGGCTGCAACTGTGATGAATCTGCACGGGTTCGTGGCTCCAGATGACTATGAGACAACACTTATTGAAGTTGATTAA 1665 45.83 MATNWKLADHPKLPKGKTIAVVVLDGWGEASPNQYNCIHVAETPTMDSLKNTAPDWWRLVKAHGKAVGLPTDDDMGNSEVGHNALGAGRIFAQGAKLVDNALASGKIYEDEGFNYIKESFANNTLHLIGLMSDGGVHSRLDQLQLLLKGASERGAKRIRVHVLTDGRDVVDGTSVDFAETLEKDLAELRGKGIDAQIASGGGRMYVTLDRYENDWEVVKRGWDAQVLGEAPHKFKNAVEAIKKLREAPNANDQYLPPFVIVDDSGKPVGPVNDGDAVVTFNFRADRMTMLAQALEYEKFDKFDRVRFPKIRYAGMLQYDGELKLPNHYLVSPPLIERTSGEYLVKNGIRTFACSETVKFGHVTFFWNGNRSGYFNGELEKYVEIPSDSGITFNVQPKMKALEIGEKAKEAILSRKYDQIRVNIPNGDMVGHTGDIEATVVACKAADEAVKMILDAVEQVGGIYVVTADHGNAEDMVKRDKKGEPIVGKDGKVQIQTSHTLQPVPVAIGGPGLSKGVKYRKDVPDGGLANVAATVMNLHGFVAPDDYETTLIEVD 554
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cobi6g01045 554 SUPERFAMILY 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 93 328 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Cobi6g01045 554 Gene3D - 93 337 IPR036646 GO:0004619(InterPro)|GO:0005737(InterPro)
Cobi6g01045 554 NCBIfam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 18 546 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Cobi6g01045 554 Pfam BPG-independent PGAM N-terminus (iPGM-N) 98 319 IPR011258 GO:0004619(InterPro)|GO:0005737(InterPro)|GO:0006007(InterPro)|GO:0030145(InterPro)
Cobi6g01045 554 SUPERFAMILY Alkaline phosphatase-like 18 545 IPR017850 -
Cobi6g01045 554 PIRSF IPGAM 12 554 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
Cobi6g01045 554 Pfam Metalloenzyme superfamily 17 540 IPR006124 GO:0003824(InterPro)|GO:0046872(InterPro)
Cobi6g01045 554 Gene3D Alkaline Phosphatase, subunit A 20 543 IPR017850 -
Cobi6g01045 554 FunFam 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 93 336 - -
Cobi6g01045 554 PANTHER 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE 5 552 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)|GO:0030145(PANTHER)|GO:0044262(PANTHER)|GO:0046537(PANTHER)
Cobi6g01045 554 CDD iPGM 17 551 IPR005995 GO:0004619(InterPro)|GO:0006007(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cobi6g01045 K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
69720 Cobi11g02685 Cobi6g01045
70596 Cobi1g03317 Cobi6g01045
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1830659 Cobi Cobi1g03317 Cobi-Chr1:82568006 Cobi6g01045 Cobi-Chr6:8398414
1842293 Cobi Cobi11g02685 Cobi-Chr11:70519887 Cobi6g01045 Cobi-Chr6:8398414