AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu31g02161 ATGGCAGACAATATTAATTATTCATCTCCACCAAACCCCCGTCTCGGTGCATTCTTTAGGGAACAAGCTATGGCTTCTATTGCTCACCTTCATCACTCCCCTCTCTCCGGAAACAACCTTCGTCATTCGCGTATTCCTGGCCTCCAGTTACCAACCCTTGCCTGCAAAAACCTTGTCGCTTTGCCTCTCCGATTTAAGCCAATTGATATACTATCTATTCGACAACCGATTCCCTGTACTGGTGGTGGAGGTGGTAGTGCTGGTGTTGGCAATGGAAGCGGTGGCGGAGGAGGAGGAGGTAATGGTGGTGATAGTCGCCTGGACGAAGGGGGAAAATTCGACGACAATTCATCGGTAGACAGTTTCGGGCCATTTGGGGCTTTACTTAGTGGTTGGAGATCAAGGGTTGCTGCTGATCCCCAATTTGCATTCAAGGTGTTAATGGAGGAAGTTGTGGGTGTGAGTGCAACCGTGTTCGGTGACATGGCAACGCGTCCAAATTTCGGTCTAAACGAGCTTGATTTCGTGTTTTCGACACTAGTCGTAGGATCAATCTTGAATTTCACCCTTATGTATCTATTAGCACCCACCATGTCATCTGGATCAACAACCCTCCCTTTCATATTCGCCAATTCGCCAACAAGCCACATGTTTGAGCCCGGTGCATACAGTGCGGTGAACCGGCTAGGGACATTTGTGTACAAAGGAATATTGTTTGCAGCAGTGGGGTTTGCTGCTGGTTTAGTTGGGACCGCGTTGTCCAATGGGTTGATCAAAATAAGGAAGAAAATGGACCCCGGGTTCGAGTCACCTAACAAGGCTCCACCTACTGTATTGAATGCGGTCACATGGGCGATTCACATGGGTTTAAGTGCTAATTTAAGGTACCAAAGTCTGAATGGGATCGAGTTTTTGTTGGCGAAGGGGTTACCGCCGTTGTTGTTTAAGAGCTCCGTGTTCGGGTTGAGACTGGCGAACAACGTTCTTGGTGGAATGACTTTTGTGATGTTGGCAAGGGTGACCGGATCGCAAAGCGCTGCTAGTGGTGAACACAAGGTTACCGATGAATAG 1071 48.46 MADNINYSSPPNPRLGAFFREQAMASIAHLHHSPLSGNNLRHSRIPGLQLPTLACKNLVALPLRFKPIDILSIRQPIPCTGGGGGSAGVGNGSGGGGGGGNGGDSRLDEGGKFDDNSSVDSFGPFGALLSGWRSRVAADPQFAFKVLMEEVVGVSATVFGDMATRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTMSSGSTTLPFIFANSPTSHMFEPGAYSAVNRLGTFVYKGILFAAVGFAAGLVGTALSNGLIKIRKKMDPGFESPNKAPPTVLNAVTWAIHMGLSANLRYQSLNGIEFLLAKGLPPLLFKSSVFGLRLANNVLGGMTFVMLARVTGSQSAASGEHKVTDE 356
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu31g02161 356 Pfam Protein RETICULATA-related 135 302 IPR021825 -
Hetu31g02161 356 PANTHER PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED 61 346 - -
Hetu31g02161 356 MobiDBLite consensus disorder prediction 84 113 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu31g02161 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
299533 Hetu31g02161 Hetu32g02165
300188 Hetu31g02161 Hetu33g02093
411751 Hetu1g00053 Hetu31g02161
415548 Hetu2g00116 Hetu31g02161
416250 Hetu31g02161 Hetu3g00053
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3364431 Hetu Hetu31g02161 Hetu-Chr31:123374268 Hetu34g00546 Hetu-Chr34:36715628
3531798 Hetu Hetu1g00053 Hetu-Chr1:2765603 Hetu31g02161 Hetu-Chr31:123374268
3580649 Hetu Hetu2g00116 Hetu-Chr2:3778154 Hetu31g02161 Hetu-Chr31:123374268
3580667 Hetu Hetu2g00037 Hetu-Chr2:1344030 Hetu31g02161 Hetu-Chr31:123374268
3620027 Hetu Hetu3g00053 Hetu-Chr3:2798331 Hetu31g02161 Hetu-Chr31:123374268
3623705 Hetu Hetu31g02161 Hetu-Chr31:123374268 Hetu32g02165 Hetu-Chr32:125404587
3625248 Hetu Hetu31g02161 Hetu-Chr31:123374268 Hetu33g02093 Hetu-Chr33:117813530