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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso1g03566 ATGCATATGAGGCTTCAATTTCGAAGTCCAGTGAAGCTTGTTTTGCTAATTTGCTTCTGCTGGTGGCCAATTGTTGAATCTCAAATATCTAATCCTCTACCAAAGCCTGCAAGGGCCCTTGATGCAACCCTACAGGACTATGCATATCGTGCGTTTATTAATCCACGTACTGGTATTCCCTTTAATGGCATTGTCCCGCCATATTTGACAGGAATTGAGATATCAGCAATGAGGCTCAGAAGCGGTAGTCTGTATCGTCGAGGCGTTAAAACCTTTAAAGAGTTCTTAATTCCGGTTGGTTTAAGAGAGCAGCCATATGTGGAGCGACTTGTTCTGGTGTATCAAAATTTAGGAAATTGGTCCACAACTTATTACTCTTTACCTGGTTATGTTTATCTAGCTCCGATATTAGGTCTTCTTGCTTATAATGGTTCAGATTTGTCAGCTTCTAATCTACCAGAACTTGACTTTTGGGCTTCTGAGGAAGTCATTACGATAAATTTTGGAAGAATACGCCCCATACCAGTTGGTTTGGTTGCAAAGTGTGCTTGGTTTGATCTACATGGTCAGGTGAATCTCACAAACTTGTTATCTGGGAATGTATGTTCAACCACTGAACAGGGGCATTTCTCCATTGTGGCTGAATCAGCTGTCCCTCCTGTTCCAGTACCTCCTGCATCACCTGAACCTGCACCCTCTGAACCTGCACACAGTAGTAGAAAGAACAATGAGCCTAGGATTTGGGGTATTATTGGCGCGGTAACTGGTGGAACTGCATTGTTGGTGTTGTTGGCATTGTTGATATTGTGGGCTTGGCGGTACAAAAAGAGAAATCGAATGCGTGAATTGGAAAGGGCTGCAGATGCTGGTGAAGCATTGAGGATGACCAGAATTGGGAGCATGAGAGCACCATTTGCATTGGCCACAAGAACAATGCCGGATTTTGAAAGCGAATTTGGTGCTTGA 966 43.58 MHMRLQFRSPVKLVLLICFCWWPIVESQISNPLPKPARALDATLQDYAYRAFINPRTGIPFNGIVPPYLTGIEISAMRLRSGSLYRRGVKTFKEFLIPVGLREQPYVERLVLVYQNLGNWSTTYYSLPGYVYLAPILGLLAYNGSDLSASNLPELDFWASEEVITINFGRIRPIPVGLVAKCAWFDLHGQVNLTNLLSGNVCSTTEQGHFSIVAESAVPPVPVPPASPEPAPSEPAHSSRKNNEPRIWGIIGAVTGGTALLVLLALLILWAWRYKKRNRMRELERAADAGEALRMTRIGSMRAPFALATRTMPDFESEFGA 321
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso1g03566 321 Pfam Protein of unknown function (DUF1191) 36 214 IPR010605 -
Smso1g03566 321 MobiDBLite consensus disorder prediction 221 241 - -
Smso1g03566 321 PANTHER PROTEIN, PUTATIVE (DUF1191)-RELATED 15 319 IPR010605 GO:0016020(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso1g03566 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
147316 Smso17g00123 Smso1g03566
149169 Smso1g03566 Smso8g00129
337968 Smso28g00520 Smso1g03566
357519 Smso1g03566 Smso28g00520
429020 Smso1g03566 Smso28g00520
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4967715 Smso Smso1g03566 Smso-Chr1:120638643 Smso29g01142 Smso-Chr29:22647622
5024253 Smso Smso1g03566 Smso-Chr1:120638643 Smso17g00123 Smso-Chr17:1386938
5027940 Smso Smso1g03566 Smso-Chr1:120638643 Smso28g00520 Smso-Chr28:14584588
5029657 Smso Smso1g03566 Smso-Chr1:120638643 Smso8g00129 Smso-Chr8:1755635