AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g00116 ATGTCTTCCGTTGCTCCAATTCATCAATCTTATGTTGCCAGAAACACCCGTTGTTGTTTGAATCCTGCTAGACATGTTCCACACCTCCAGTTACTCAACCTAACCCGCAAAAAACTCGTCGATTTTACCGGTTTGTGTATCAGATCAAAGCCAGATTTGTTATCCACCCGGCATGCAGTTCCGGTTGTTCCCTGTGCTGGTGGCGATGGCGGTAGCTCAGGTGTCGGTCACGGCAGTGGCGGTGGAGGTGGCAGTGGCGGTGGCGGTCGCGACTGGAGCAGCGGCGGAAAATCCAATGACTCATCGTCATTCGACAGTTTCGGCCCAATTGGGGCTTTTCTTAGTGGTTGGAGATCTAGGGTTGCAGCTGATCCCCAATTTCCATTTAAGGTGTTAATGGAAGAATTAGTTGGTGTGAGTGCAAATGTGTTAGGTGACATGGCGACTCGTCCGAATTTCGGTCTAAACGAGCTAGATTTCGTGTTCTCGACGTTAGTCGTAGGATCAATCCTGAATTTCACCCTTATGTATTTACTAGCACCCACCATGACATCCGGATCAGCATCATTACCTTTCATATTCGCGAACTCGCCAGCTAGCCACATGTTTGAGCCGGGCGCGTACACACTGGCTAACCGGTTTGGAACATTTGTATACAAAGGAGCCCAGTTTGCAGCCGTGGGTTTCGCTGCTGGTTTAGTTGGAACCGCGTTGTCAAACGGGTTGATCAAGATGAGAAAAAAGATGGACCCTACTTTCGAGTCGCCAAACAAGGCTCCACCAACCGTCTTGAACGCGATCACATGGGCGATCCATATGGGTATAAGTAGTAATTTAAGGTACCAAAGTTTGAATGGAATCGAGTTCATGCTGGCGAAGGGGTTACCTCCGTTGTTGTTCAAAACCTCGGTGGTTGGTTTAAGGTTGGTGAACAATCTTCTTGGTGGGATGACATTTGTTATGCTTGCAAGGTTGACTGGATCGCAAAGTGCGGGTGGAGAAGAAGACAAGATTGGTGATGAAGAGAGTTCAGATGTGGAGAAGAAGTTACTTGTGAATGAAATTCATTCAAAGTGA 1077 47.82 MSSVAPIHQSYVARNTRCCLNPARHVPHLQLLNLTRKKLVDFTGLCIRSKPDLLSTRHAVPVVPCAGGDGGSSGVGHGSGGGGGSGGGGRDWSSGGKSNDSSSFDSFGPIGAFLSGWRSRVAADPQFPFKVLMEELVGVSANVLGDMATRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTMTSGSASLPFIFANSPASHMFEPGAYTLANRFGTFVYKGAQFAAVGFAAGLVGTALSNGLIKMRKKMDPTFESPNKAPPTVLNAITWAIHMGISSNLRYQSLNGIEFMLAKGLPPLLFKTSVVGLRLVNNLLGGMTFVMLARLTGSQSAGGEEDKIGDEESSDVEKKLLVNEIHSK 358
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g00116 358 Pfam Protein RETICULATA-related 120 287 IPR021825 -
Hetu2g00116 358 MobiDBLite consensus disorder prediction 71 102 - -
Hetu2g00116 358 PANTHER PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED 54 331 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g00116 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
266752 Hetu1g00053 Hetu2g00116
268619 Hetu2g00116 Hetu3g00053
269354 Hetu3g00053 Hetu2g00116
415548 Hetu2g00116 Hetu31g02161
415549 Hetu2g00116 Hetu32g02165
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3356481 Hetu Hetu2g00116 Hetu-Chr2:3778154 Hetu30g00908 Hetu-Chr30:50124950
3528683 Hetu Hetu1g00053 Hetu-Chr1:2765603 Hetu2g00116 Hetu-Chr2:3778154
3578607 Hetu Hetu2g00037 Hetu-Chr2:1344030 Hetu2g00116 Hetu-Chr2:3778154
3579766 Hetu Hetu2g00116 Hetu-Chr2:3778154 Hetu3g00053 Hetu-Chr3:2798331
3580649 Hetu Hetu2g00116 Hetu-Chr2:3778154 Hetu31g02161 Hetu-Chr31:123374268
3580921 Hetu Hetu2g00116 Hetu-Chr2:3778154 Hetu32g02165 Hetu-Chr32:125404587
3581215 Hetu Hetu2g00116 Hetu-Chr2:3778154 Hetu33g02093 Hetu-Chr33:117813530