AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Smso28g00519 ATGGCGTACCGTCGACGGCAGGGACTTTCTAGGTCTTCCACGTTCAACGAAGAGATTCTCCGTCAGCCGGACCAAGACGACGCCACCACATCCTCCGCCGCTCTGCCGCACACATCCTCCGATCCTCTTCTCCACTCGTTCCGCTCCTCCTTCACTAACCGATCCAAGAGTTCTGCTACTTTTGATAATGCTTCAATGAGGAGTACGAATGCACGTGAAGGATTTTGGGGCGTTTTAGCAAGGAAAGCTAAATCAATTCTAGAAGATGAAGTTCCTCAACAATCAATTACTCCTGCCAGTAAGAAGCCGGAAACAATTAGGTTTTCACCAAGCAGCCAGTTCACTGGCATTCAAGTTCAACATCAATATGAGTCATTTGAGAGTTCAAGGAAAATAGACAATGCAGCATTGAGGATGGGCTTGGAAAGACTCATGCCTTCGCTTAATCAGATTGGTGACACCATTGGCAATGCTTTGGAGGCAGAGAAGAAAACTCAAGATATCATCCAAGAAAGTCATAATCTGCAAAACAGGAGAAGAGTATTTGATAATCACGAAAAGAATCAAGATCCCAGAATGCAATCTGCTCAATCACAGAGGAACCAAGAAACTCAACTCCAGGCTTCTCGCGACGTGGCATTAGCAGCAACAGCTGCGAAGGTAAAACAACTTGCTCGGCAGCTGAAAACTGTGAATGCAGAAATAGCATTTGCGAAAGAACGATGTTATCAACTAGAAAAAGAAAATAAATGGCTTCAAGAGGGTCAAGAAAAAGGAGACCACCCTGCAGATGATGACATGATACGGGTTCAACTAGAGACACTATTGGCGGAGAAGGGGCGTTTGGCACACGAGAATTCAGTATATGCACGCGAAAACAGGTACTTGAGAGAAATAGTTGAATTCCGCCTACAAGATATGGTGTATTTGAATGAGGGCATCAAAGAAACCTCCCAAGATCCAGTGGAGGAACCCGGTTTGACTGAGAATCCCCAAGTTGACGGGGATGGGGAACACCCGGATCGGGTCAACCCTATAATACAAGTCAAATCCTAA 1056 45.55 MAYRRRQGLSRSSTFNEEILRQPDQDDATTSSAALPHTSSDPLLHSFRSSFTNRSKSSATFDNASMRSTNAREGFWGVLARKAKSILEDEVPQQSITPASKKPETIRFSPSSQFTGIQVQHQYESFESSRKIDNAALRMGLERLMPSLNQIGDTIGNALEAEKKTQDIIQESHNLQNRRRVFDNHEKNQDPRMQSAQSQRNQETQLQASRDVALAATAAKVKQLARQLKTVNAEIAFAKERCYQLEKENKWLQEGQEKGDHPADDDMIRVQLETLLAEKGRLAHENSVYARENRYLREIVEFRLQDMVYLNEGIKETSQDPVEEPGLTENPQVDGDGEHPDRVNPIIQVKS 351
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Smso28g00519 351 MobiDBLite consensus disorder prediction 1 47 - -
Smso28g00519 351 MobiDBLite consensus disorder prediction 315 351 - -
Smso28g00519 351 Coils Coil 214 248 - -
Smso28g00519 351 MobiDBLite consensus disorder prediction 7 47 - -
Smso28g00519 351 PANTHER UNCHARACTERIZED 1 325 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Smso28g00519 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
147320 Smso17g00124 Smso28g00519
153321 Smso28g00519 Smso8g00130
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
4984997 Smso Smso28g00519 Smso-Chr28:14557730 Smso7g01319 Smso-Chr7:54790814
5065542 Smso Smso17g00124 Smso-Chr17:1390556 Smso28g00519 Smso-Chr28:14557730
5078000 Smso Smso20g01804 Smso-Chr20:61170727 Smso28g00519 Smso-Chr28:14557730
5096040 Smso Smso28g00519 Smso-Chr28:14557730 Smso29g01573 Smso-Chr29:42762911
5096377 Smso Smso28g00519 Smso-Chr28:14557730 Smso8g00130 Smso-Chr8:1761392