AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stre1g04261 ATGAATACCAGCCGAGTAGCTTGGTTTTTTAATTCTCAATATCTACGCTGCATTTATAATATAAACTCACTTCTGCATTTCCACTTTCTACTCATTCACTGCCGCCTGCAACTACCGGCCGGCCGGCAACCGATCCCATCGTTTCTTCTCCGGTCACCACGATCCATCCAGCTCTGTAAAGGTTCCTTTTCGCGTGGAGGCAAAGCGATCACACTCGTTCTATTAGCAACAAAATATGTCTTCTGTTGCTCCAATTCATCAATCTGCTCTCACCGGAAACAACCGTCACGTAAATCCGGCGAGGCATATTCCCGGCCTCCAATTACCAAACCTCACCAGCAAAAACTCGTCGATTTCACTGGTTTTTCTCTCCGATCAAAGCAAATTAGCCTAGATTTACTATCAAATCGACATGCTATTCCCTGCGCCGGCGGCGATGGCGGTAGTTCCGGCGTCGGTCACGGCAGTGGCGGAGGAGGTGACGGTGGTGGTAGTGACTGGAACAGCAGCGGAGGCGGAAGATCCGATGACTCATCATCATCAGACAGTTTCGGTCCAATTGGGGCTTTTCTTAGCGGTTGGAGATCTAGGGTTGCTGCTGATCCGCAATTTCCTTTCAAGGTTTTAATGGAAGAAGTTGTAGGTGTGAGTGCGAACGTGTTTGGTGACATGGCGACTCGCCCGAACTTCGGTCTAAACGAACTCGATTTCGTGTTCTCAACACTTGTCGTTGGTTCAATCTTGAATTTCACCCTCATGTATCTGTTAGCACCCACCATGACATCTGGATCATCAACCCTTCCTTCAATCTTTGCCAATTCACCCGCGAGCCACATGTTTGAACCCGGTCCATACACCTTGGTTAACCGGTTAGGTACATTTGTCTACAAAGGAGCCGTGTTTGCAGCCGTGGGTTTCGCAGCTGGTTTAGTTGGAACCGCGTTGTCAAACGGGTTGATCAAGATGCGGAAAAAGATGGACCCAAGTTTCGAGTCACCAAACAAGGCTCCACCGACTGTTTTAAATGCCACCACTTGGGCGATTCATATGGGTATAAGCAGTAATCTGAGATACCAAAGTTTAAACGGGATCGAGTTCATGCTCGAGAAAGGATTATCGCCATTTTTATTCAAGAGTTCAGTTGTCGGGTTGCGGTTGGTGAATAATGTTCTTGGTGGAATGACATTTGTAATGTTAGCAAGGTTGACTGGATCACAAAGTGCTGGTGGTGAACAAGACAAGATTGCTGATGAAGAAAGTTCAGATGAGGAGAAAAAGTTACTGATCAATGAAATTGCTTCAAAGCAACTTTTCAAGTGTAGCCCGTACATGCGAAGCGACCACCTGTTTTAA 1353 46.86 MNTSRVAWFFNSQYLRCIYNINSLLHFHFLLIHCRLQLPAGRQPIPSFLLRSPRSIQLCKGSFSRGGKAITLVLLATKYVFCCSNSSICSHRKQPSRKSGEAYSRPPITKPHQQKLVDFTGFSLRSKQISLDLLSNRHAIPCAGGDGGSSGVGHGSGGGGDGGGSDWNSSGGGRSDDSSSSDSFGPIGAFLSGWRSRVAADPQFPFKVLMEEVVGVSANVFGDMATRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPTMTSGSSTLPSIFANSPASHMFEPGPYTLVNRLGTFVYKGAVFAAVGFAAGLVGTALSNGLIKMRKKMDPSFESPNKAPPTVLNATTWAIHMGISSNLRYQSLNGIEFMLEKGLSPFLFKSSVVGLRLVNNVLGGMTFVMLARLTGSQSAGGEQDKIADEESSDEEKKLLINEIASKQLFKCSPYMRSDHLF 450
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stre1g04261 450 Pfam Protein RETICULATA-related 197 364 IPR021825 -
Stre1g04261 450 PANTHER PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED 121 408 - -
Stre1g04261 450 MobiDBLite consensus disorder prediction 168 182 - -
Stre1g04261 450 MobiDBLite consensus disorder prediction 89 109 - -
Stre1g04261 450 MobiDBLite consensus disorder prediction 145 182 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stre1g04261 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5190722 Stre Stre1g04261 Stre-Chr1:128523731 Stre9g01359 Stre-Chr9:22696348
5211436 Stre Stre1g04261 Stre-Chr1:128523731 Stre1g04266 Stre-Chr1:128619388